Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 5.8e-232 807.4 462 100.0
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 2.5e-227 792.0 462 97.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 7.6e-224 780.4 462 96.1
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 7.4e-211 737.3 462 92.4
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 8.2e-186 654.1 462 81.0
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.5e-182 643.3 462 79.9
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 2.5e-182 642.5 462 79.9
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 2.1e-181 639.4 462 79.9
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 8.0e-181 637.5 462 80.1
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.0e-180 637.1 462 77.3
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.4e-180 636.7 462 78.6
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 2.6e-179 632.5 462 78.4
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.4e-179 632.1 462 79.4
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 3.4e-179 632.1 462 78.6
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.4e-179 631.7 462 79.2
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 9.8e-179 630.6 462 80.1
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 2.4e-177 625.9 461 79.2
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.3e-175 620.2 459 75.4
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.7e-175 619.8 459 75.2
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.8e-175 618.6 459 75.2
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.9e-174 616.3 464 70.5
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.9e-174 616.3 459 78.2
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 2.5e-174 615.9 458 76.9
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 3.2e-174 615.5 462 76.4
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 4.2e-174 615.1 461 76.4
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 7.2e-174 614.4 465 77.0
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 7.2e-174 614.4 463 76.2
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 7.2e-174 614.4 464 76.5
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 9.4e-174 614.0 462 76.2
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.6e-173 613.2 459 76.3
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.7e-173 612.5 460 78.0
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 6.1e-173 611.3 459 75.4
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 8.0e-173 610.9 459 77.1
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.0e-172 610.5 462 76.2
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.4e-172 610.1 462 77.3
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 2.3e-172 609.4 459 77.6
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 8.8e-172 607.4 460 77.6
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.2e-171 607.1 460 76.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.0e-171 606.3 460 77.4
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 2.0e-171 606.3 463 76.2
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 4.4e-171 605.1 459 77.1
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.4e-171 605.1 462 76.6
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.3e-170 603.6 462 76.2
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 2.8e-170 602.4 459 76.9
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 6.3e-170 601.3 462 76.0
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 8.3e-170 600.9 441 80.3
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 1.8e-169 599.7 466 74.5
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.4e-169 599.4 462 75.8
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 3.1e-169 599.0 504 65.7
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-168 596.7 462 74.5
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 2.7e-168 595.9 462 75.1
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 2.7e-168 595.9 462 74.5
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 5.9e-168 594.7 463 73.0
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 7.7e-168 594.3 454 75.6
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.0e-167 594.0 462 74.0
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.3e-167 593.6 462 74.7
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.7e-167 593.2 464 75.2
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.9e-167 592.4 460 73.5
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 6.6e-167 591.3 459 68.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 6.6e-167 591.3 459 68.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 6.6e-167 591.3 464 75.4
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.9e-166 589.7 462 74.7
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 3.3e-166 589.0 460 75.2
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 5.6e-166 588.2 460 74.3
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 9.5e-166 587.4 459 75.2
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 2.1e-165 586.3 462 74.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.7e-165 585.1 461 73.3
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 6.1e-165 584.7 462 73.8
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.8e-164 583.2 462 72.9
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 3.4e-163 578.9 459 72.3
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 3.4e-163 578.9 483 71.0
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.2e-160 570.5 459 72.1
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.6e-160 568.5 462 73.6
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 4.6e-160 568.5 460 72.6
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.0e-159 567.4 476 71.6
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 1.7e-159 566.6 460 72.4
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.9e-158 563.1 462 69.9
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.5e-155 553.5 493 67.7
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 5.8e-155 551.6 456 72.6
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.3e-154 550.4 551 63.5
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.9e-154 549.3 462 69.7
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 6.4e-154 548.1 460 70.2
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.4e-153 547.0 456 72.1
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.9e-153 546.6 456 72.4
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.2e-153 545.8 462 69.3
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 4.1e-153 545.4 456 71.5
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 4.6e-152 542.0 465 69.5
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.6e-152 542.0 462 69.9
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 4.6e-152 542.0 463 68.7
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 6.0e-152 541.6 462 69.7
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 7.8e-152 541.2 461 69.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.0e-151 540.8 465 62.8
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.0e-151 540.8 462 69.9
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.2e-149 533.9 387 70.0
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.4e-148 530.4 388 70.4
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.4e-148 530.4 387 70.5
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 8.9e-148 527.7 462 67.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.5e-147 526.9 462 62.1
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.9e-145 520.0 460 68.3
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.4e-145 519.6 459 66.4
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 4.1e-145 518.8 389 68.9
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 7.1e-145 518.1 462 67.3
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 6.0e-144 515.0 382 78.8
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 1.1e-142 510.8 388 68.0
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.6e-141 506.9 463 59.6
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.2e-137 492.7 459 64.7
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 9.6e-134 481.1 462 59.1
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 3.1e-132 476.1 496 62.1
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.3e-130 470.7 465 60.9
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.3e-127 460.7 462 64.3
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 2.5e-126 456.4 384 71.9
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 3.3e-126 456.1 462 61.7
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 9.9e-115 417.9 367 62.9
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.7e-114 417.2 463 56.6
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.8e-109 399.1 464 51.7
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 7.2e-97 358.6 462 48.1
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 7.9e-96 355.1 300 61.3
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.5e-89 333.6 315 60.6
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 3.1e-76 290.0 324 62.0
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 9.1e-68 261.9 390 39.7
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.1e-64 250.8 408 37.3
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.5e-59 233.4 241 51.0
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.8e-55 221.1 187 66.8
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 2.3e-50 204.1 506 39.1
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.3e-45 188.3 397 32.5
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 3.0e-42 177.2 159 62.9
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.9e-42 176.8 151 63.6
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.0e-42 176.4 123 72.4
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 5.2e-39 166.4 504 34.3
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 4.4e-38 163.3 134 63.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 3.0e-34 150.6 121 68.6
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.4e-28 131.7 156 52.6
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.2e-22 112.1 150 69.3
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.4e-22 110.5 188 41.0
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 5.8e-22 109.8 91 62.6
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 7.1e-20 102.8 68 77.9
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.1e-18 96.7 55 90.9
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 1.2e-16 92.0 107 51.4
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.3e-10 72.0 97 49.5
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 3.9e-10 70.5 47 72.3
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 1.9e-09 68.2 55 69.1
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 4.3e-09 67.0 60 58.3
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 7.3e-09 66.2 49 77.6
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.6e-08 65.1 405 21.5
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 4.8e-08 63.5 406 20.7
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 4.8e-08 63.5 406 20.7
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 6.2e-08 63.2 64 54.7
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.1e-07 62.4 70 48.6
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 1.1e-07 62.4 399 20.8
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 1.4e-07 62.0 409 21.3
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 2.4e-07 61.2 411 21.2
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 3.1e-07 60.8 408 20.3
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 3.1e-07 60.8 57 56.1
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 5.3e-07 60.1 406 20.7
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 9.0e-07 59.3 64 53.1
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 2.0e-06 58.2 257 25.3
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 2.6e-06 57.8 249 24.5
MELO3C035393.2 Cucumis melo HOM05D008781 ORTHO05D013374 3.4e-06 57.4 47 68.1
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 3.4e-06 57.4 405 21.5
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 3.4e-06 57.4 407 20.4
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 5.8e-06 56.6 243 24.3


User provided reference genes

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