Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 4.0e-134 481.5 253 100.0
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 4.2e-123 444.9 253 91.7
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 2.1e-111 406.0 257 84.0
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 7.7e-85 317.8 220 79.1
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 1.9e-75 286.6 237 62.4
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 9.4e-75 284.3 238 62.6
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 1.4e-73 280.4 252 57.9
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 5.7e-72 275.0 231 60.2
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 4.1e-70 268.9 244 58.6
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 7.0e-70 268.1 204 64.7
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 9.1e-70 267.7 253 54.5
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 2.0e-69 266.5 253 56.1
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 4.5e-69 265.4 255 57.3
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.3e-68 263.8 252 55.6
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 3.8e-68 262.3 262 54.2
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 5.0e-68 261.9 252 55.2
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 6.5e-68 261.5 230 59.1
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 8.0e-66 254.6 281 50.5
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 8.0e-66 254.6 240 55.8
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 2.3e-65 253.1 250 54.0
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 5.2e-65 251.9 243 54.3
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 8.2e-63 244.6 249 52.6
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 1.4e-62 243.8 235 55.3
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 1.8e-62 243.4 193 60.6
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 5.3e-62 241.9 214 53.7
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 4.5e-61 238.8 246 53.7
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 4.5e-61 238.8 275 48.0
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 5.0e-60 235.3 255 51.4
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.5e-59 233.0 200 58.0
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 2.5e-59 233.0 195 56.4
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 5.5e-59 231.9 254 48.0
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 1.4e-57 227.3 213 54.5
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 2.3e-57 226.5 248 49.2
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 8.8e-57 224.6 196 54.1
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 5.7e-56 221.9 230 48.7
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 9.8e-56 221.1 246 48.8
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 1.3e-55 220.7 199 52.8
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.7e-55 220.3 228 51.8
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.7e-55 220.3 200 51.0
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 4.8e-55 218.8 230 53.5
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 4.8e-55 218.8 246 48.4
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 6.3e-55 218.4 323 40.2
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 1.1e-54 217.6 246 48.0
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.1e-54 216.1 220 49.5
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 5.4e-54 215.3 198 54.0
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 5.4e-54 215.3 247 47.8
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 9.1e-54 214.5 203 50.7
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 1.2e-53 214.2 247 47.8
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 2.7e-53 213.0 201 51.7
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 2.7e-53 213.0 198 51.5
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 4.5e-53 212.2 202 50.5
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 4.5e-53 212.2 202 50.5
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.3e-52 210.7 202 50.5
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 1.3e-52 210.7 228 47.8
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 1.7e-52 210.3 226 48.7
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 3.8e-52 209.1 262 46.6
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 5.0e-52 208.8 237 47.3
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 8.6e-52 208.0 261 46.7
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 1.1e-51 207.6 201 49.8
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.1e-51 207.6 182 56.0
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.1e-51 207.6 202 49.0
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 2.5e-51 206.5 246 48.4
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 3.3e-51 206.1 252 46.0
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 5.5e-51 205.3 200 51.0
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 7.2e-51 204.9 195 48.7
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 9.5e-51 204.5 259 44.0
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 9.5e-51 204.5 225 48.4
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.2e-50 204.1 190 53.7
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.6e-50 203.8 243 46.1
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 6.1e-50 201.8 197 50.3
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 6.1e-50 201.8 252 44.4
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 1.4e-49 200.7 245 43.7
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.2e-48 197.6 210 46.2
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 8.3e-47 191.4 245 45.7
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.8e-46 190.3 252 44.4
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 9.2e-46 188.0 167 55.1
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 2.7e-45 186.4 197 48.7
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.9e-43 180.3 160 54.4
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 1.9e-43 180.3 235 43.4
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 3.3e-43 179.5 171 48.5
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 9.5e-43 177.9 227 45.4
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.1e-42 176.8 166 48.8
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.0e-41 174.5 167 50.9
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.5e-40 170.6 251 41.4
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 2.0e-40 170.2 230 43.0
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.3e-39 167.5 169 50.9
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 2.2e-39 166.8 166 51.2
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.1e-38 164.5 197 42.1
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 1.4e-38 164.1 209 42.6
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 1.2e-37 161.0 324 34.9
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 1.7e-36 157.1 149 51.7
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.1e-33 147.9 208 42.3
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.7e-31 140.6 136 48.5
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 2.4e-30 136.7 135 51.1
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 1.6e-26 124.0 93 64.5
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 2.1e-26 123.6 177 42.9
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 2.3e-25 120.2 235 34.0
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 9.9e-24 114.8 188 32.4
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 8.6e-20 101.7 173 39.3
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 2.5e-19 100.1 88 55.7
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 1.6e-18 97.4 192 29.2
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.8e-17 94.0 124 49.2
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 6.8e-17 92.0 223 29.1
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 8.9e-17 91.7 185 28.6
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 5.8e-16 89.0 81 51.9
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.7e-15 87.4 185 28.1
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.1e-12 75.9 182 25.8
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 1.9e-11 73.9 238 26.1
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 1.9e-11 73.9 208 27.9
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 3.4e-08 63.2 113 34.5
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 1.9e-06 57.4 48 54.2
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 1.9e-06 57.4 106 34.9
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 5.4e-06 55.8 134 35.8


User provided reference genes

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