Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 1.3e-73 279.6 140 100.0
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 2.0e-71 272.3 140 97.9
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 1.3e-57 226.5 139 84.9
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 1.3e-54 216.5 140 78.6
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 9.6e-29 130.6 141 51.8
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 1.3e-28 130.2 141 52.5
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 2.4e-27 125.9 141 52.5
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 3.4e-26 122.1 167 45.5
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 4.9e-25 118.2 144 50.7
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 6.4e-25 117.9 144 50.0
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 1.9e-24 116.3 144 49.3
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 7.1e-24 114.4 144 52.1
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 2.1e-23 112.8 139 49.6
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 1.8e-22 109.8 141 47.5
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 2.3e-22 109.4 144 46.5
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 3.9e-22 108.6 149 47.7
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 1.1e-21 107.1 143 46.2
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 7.4e-21 104.4 147 44.9
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 2.1e-20 102.8 151 47.7
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 2.8e-20 102.4 157 44.6
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 2.8e-20 102.4 150 44.7
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 3.7e-20 102.1 138 43.5
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 1.1e-19 100.5 139 47.5
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 5.3e-19 98.2 130 46.2
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 1.5e-18 96.7 142 40.1
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 1.5e-18 96.7 162 37.7
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 2.0e-18 96.3 141 41.8
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 4.5e-18 95.1 138 46.4
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 7.6e-18 94.4 166 38.6
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 7.6e-18 94.4 122 48.4
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 1.3e-17 93.6 157 41.4
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 1.7e-17 93.2 161 39.1
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 2.9e-17 92.4 166 35.5
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 3.8e-17 92.0 146 43.2
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 4.9e-17 91.7 145 45.5
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 8.4e-17 90.9 166 37.3
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 8.4e-17 90.9 171 38.0
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 8.4e-17 90.9 122 47.5
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 1.1e-16 90.5 159 42.1
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 2.5e-16 89.4 141 42.6
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 3.2e-16 89.0 159 42.1
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 3.2e-16 89.0 173 35.3
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 4.2e-16 88.6 148 40.5
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 5.5e-16 88.2 140 40.0
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 9.3e-16 87.4 150 40.0
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 1.6e-15 86.7 159 39.6
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 1.6e-15 86.7 159 39.6
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 2.7e-15 85.9 166 34.9
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 3.5e-15 85.5 127 44.1
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 4.6e-15 85.1 161 36.0
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 8.7e-14 80.9 163 38.0
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 1.5e-13 80.1 141 43.3
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 1.9e-13 79.7 171 35.7
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 2.5e-13 79.3 132 47.0
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 4.3e-13 78.6 118 41.5
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 5.7e-13 78.2 141 43.3
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 9.6e-13 77.4 142 38.7
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 1.6e-12 76.6 142 40.1
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 1.6e-12 76.6 141 39.0
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 6.3e-12 74.7 144 40.3
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 1.4e-11 73.6 143 43.4
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 4.1e-11 72.0 121 41.3
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 4.1e-11 72.0 134 41.0
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 6.9e-11 71.2 128 37.5
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 2.6e-10 69.3 122 44.3
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 1.0e-09 67.4 143 31.5
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 1.3e-09 67.0 81 51.9
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 3.8e-09 65.5 144 39.6
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 3.8e-09 65.5 106 44.3
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 8.5e-09 64.3 124 37.1
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 1.4e-08 63.5 155 34.8
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 2.5e-08 62.8 108 40.7
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 2.5e-08 62.8 143 37.8
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 3.2e-08 62.4 84 45.2
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 4.2e-08 62.0 141 34.8
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 9.3e-08 60.8 118 39.0
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 9.3e-08 60.8 132 37.1
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 1.2e-07 60.5 131 31.3
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 3.6e-07 58.9 63 49.2
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 3.6e-07 58.9 142 38.7
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 4.6e-07 58.5 86 41.9
CARHR045140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 7.9e-07 57.8 57 50.9
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 1.8e-06 56.6 109 36.7
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 1.8e-06 56.6 88 45.5
BolC5t34105H Brassica oleracea HOM05D001472 ORTHO05D007811 2.3e-06 56.2 124 31.5
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 2.3e-06 56.2 84 40.5
CBR_g12019 Chara braunii HOM05D003947 ORTHO05D004614 3.0e-06 55.8 46 63.0
BraA05t22411Z Brassica rapa HOM05D001472 ORTHO05D007811 5.1e-06 55.1 129 34.1
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 5.1e-06 55.1 100 38.0
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 6.7e-06 54.7 96 43.8


User provided reference genes

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