Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 4.1e-156 554.7 276 100.0
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 1.1e-137 493.4 276 89.9
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 1.2e-134 483.4 277 88.8
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 3.5e-131 471.9 276 84.8
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 3.5e-99 365.5 285 66.0
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 2.1e-96 356.3 284 64.8
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 8.1e-96 354.4 283 63.3
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 5.2e-95 351.7 284 64.4
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 5.2e-95 351.7 284 62.7
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 8.9e-95 350.9 285 64.6
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 1.2e-94 350.5 284 63.0
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 2.6e-94 349.4 285 62.1
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 2.6e-94 349.4 285 62.1
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 5.8e-94 348.2 283 62.2
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 1.3e-93 347.1 284 62.3
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 1.3e-93 347.1 283 63.3
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 2.2e-93 346.3 284 63.0
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 2.4e-92 342.8 285 62.8
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 3.2e-92 342.4 283 62.2
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 3.2e-92 342.4 284 63.0
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 4.1e-92 342.0 280 62.1
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 7.1e-92 341.3 283 62.2
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 9.2e-92 340.9 283 62.5
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 1.2e-91 340.5 281 63.0
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 4.6e-91 338.6 284 62.3
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 7.8e-91 337.8 284 60.2
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 3.0e-90 335.9 280 60.4
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 5.1e-90 335.1 279 62.0
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 1.1e-89 334.0 284 61.3
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 1.1e-89 334.0 284 61.3
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 1.2e-88 330.5 283 61.1
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 3.6e-88 328.9 284 59.2
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 4.0e-87 325.5 276 61.2
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 9.9e-86 320.9 283 57.2
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 3.8e-85 318.9 283 56.5
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 1.1e-84 317.4 279 59.5
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 1.1e-84 317.4 279 60.9
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 1.2e-83 313.9 284 58.5
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 6.0e-83 311.6 278 56.1
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 1.5e-81 307.0 281 57.3
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 9.6e-81 304.3 289 56.7
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 9.6e-81 304.3 280 55.4
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 2.8e-80 302.8 278 57.9
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 6.2e-80 301.6 288 56.6
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.2e-80 301.6 280 56.1
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 1.8e-79 300.1 285 56.1
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 4.0e-79 298.9 281 54.1
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 6.9e-79 298.1 287 54.7
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 4.4e-78 295.4 291 55.0
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 7.6e-78 294.7 282 56.0
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 1.3e-77 293.9 260 58.8
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 1.7e-77 293.5 284 53.5
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 2.9e-77 292.7 273 54.9
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 4.9e-77 292.0 284 53.9
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 6.4e-77 291.6 276 55.1
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 8.4e-77 291.2 276 55.1
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 5.4e-76 288.5 284 53.2
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 9.3e-76 287.7 280 54.6
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 9.3e-76 287.7 280 54.6
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 2.1e-75 286.6 284 56.0
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 1.1e-73 280.8 288 51.7
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 1.6e-72 276.9 286 51.7
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 2.1e-72 276.6 281 53.7
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 2.8e-72 276.2 279 53.4
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 1.4e-71 273.9 299 50.2
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 1.1e-68 264.2 288 50.7
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 3.2e-68 262.7 275 52.7
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 4.2e-68 262.3 258 55.4
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 5.4e-68 261.9 240 57.1
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 7.1e-68 261.5 279 48.4
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.5e-65 253.8 253 57.3
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 6.2e-64 248.4 233 55.8
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 8.1e-64 248.1 244 55.3
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.4e-63 247.3 280 50.0
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 1.8e-63 246.9 276 50.0
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 3.1e-63 246.1 288 46.9
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 6.9e-63 245.0 236 56.4
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 1.2e-62 244.2 238 55.5
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 2.2e-61 240.0 272 48.9
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 5.1e-58 228.8 286 45.5
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 1.5e-57 227.3 244 51.2
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 5.6e-57 225.3 256 50.0
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.6e-56 223.8 280 47.5
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 2.0e-54 216.9 297 44.8
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 4.5e-54 215.7 297 44.1
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.7e-53 213.8 280 45.7
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 3.7e-48 196.1 238 48.3
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 1.3e-45 187.6 192 51.6
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 1.7e-45 187.2 235 46.8
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 3.8e-45 186.0 145 61.4
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 6.5e-45 185.3 202 49.5
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 7.9e-43 178.3 186 52.7
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 1.0e-42 177.9 173 55.5
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 1.8e-42 177.2 186 52.7
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 1.8e-42 177.2 158 58.9
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 1.8e-42 177.2 158 58.9
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 6.7e-42 175.3 143 58.7
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 8.8e-42 174.9 301 35.9
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 1.1e-41 174.5 206 47.6
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 9.7e-41 171.4 259 42.9
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 3.7e-40 169.5 299 36.8
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 2.4e-39 166.8 201 48.3
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 6.9e-39 165.2 162 53.7
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 2.6e-38 163.3 162 53.7
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 1.0e-37 161.4 159 53.5
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 2.5e-36 156.8 223 43.9
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 2.7e-35 153.3 96 74.0
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 5.1e-34 149.1 159 54.1
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 1.5e-33 147.5 183 44.8
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 4.4e-33 146.0 129 58.9
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 1.8e-31 140.6 70 88.6
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 2.4e-31 140.2 91 72.5
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 8.5e-29 131.7 200 42.5
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 2.6e-22 110.2 196 39.3
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 1.4e-15 87.8 199 34.7
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 9.1e-15 85.1 79 54.4
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 2.0e-14 84.0 75 57.3
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 2.1e-11 73.9 47 68.1
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 2.1e-11 73.9 123 44.7
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 2.0e-09 67.4 84 45.2
SalBow6G0039 Salvia bowleyana HOM05D006517 ORTHO05D007886 7.0e-07 58.9 27 88.9
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 1.2e-06 58.2 76 39.5
Cpa.g.sc442.1 Carica papaya HOM05D000088 ORTHO05D003056 3.5e-06 56.6 92 37.0
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 7.7e-06 55.5 60 48.3
Mapoly0031s0140 Marchantia polymorpha HOM05D000903 ORTHO05D000731 7.7e-06 55.5 84 36.9


User provided reference genes

Program Settings