Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 1.1e-109 399.8 188 100.0
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 5.7e-109 397.5 188 99.5
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 3.7e-108 394.8 187 97.9
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 1.4e-104 382.9 188 94.1
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 3.2e-104 381.7 188 94.1
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 3.7e-92 341.7 183 83.1
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 4.8e-92 341.3 185 82.2
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 4.8e-92 341.3 185 82.2
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 3.1e-91 338.6 185 82.2
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.5e-90 336.3 183 81.4
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.6e-90 335.5 183 80.9
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 2.9e-89 332.0 183 79.2
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 3.8e-89 331.6 185 80.5
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.9e-88 329.3 183 79.2
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 2.5e-88 328.9 188 78.2
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 5.5e-88 327.8 181 80.1
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 7.2e-88 327.4 180 80.0
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 7.2e-88 327.4 185 79.5
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.2e-87 326.6 184 79.9
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.2e-87 326.6 184 79.9
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.6e-87 326.2 183 79.2
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.6e-87 326.2 183 79.2
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 2.1e-87 325.9 183 76.5
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 4.7e-87 324.7 187 78.1
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.0e-86 323.6 185 77.3
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.0e-86 323.6 191 76.4
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 3.0e-86 322.0 183 77.0
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.0e-85 319.3 176 80.1
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 2.0e-85 319.3 204 73.5
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 4.4e-85 318.2 183 77.6
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.4e-85 318.2 177 82.5
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 9.7e-85 317.0 190 76.8
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 9.7e-85 317.0 179 81.0
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 2.8e-84 315.5 181 78.5
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 4.8e-84 314.7 183 76.0
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 4.8e-84 314.7 181 77.3
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 4.8e-84 314.7 182 76.9
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 6.3e-84 314.3 183 74.9
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 8.2e-84 313.9 181 74.6
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.1e-83 313.5 185 76.8
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.4e-83 313.2 181 77.9
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.4e-83 313.2 200 73.5
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.4e-83 313.2 182 76.9
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.4e-83 313.2 177 81.9
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 1.8e-83 312.8 185 74.6
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 3.1e-83 312.0 186 74.2
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 3.1e-83 312.0 185 75.7
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 3.1e-83 312.0 184 76.1
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 5.3e-83 311.2 188 73.4
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 5.3e-83 311.2 188 73.4
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 5.3e-83 311.2 175 78.3
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.0e-83 310.8 185 74.1
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.0e-83 310.8 185 74.6
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 1.2e-82 310.1 181 75.7
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.2e-82 310.1 188 72.9
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 1.6e-82 309.7 185 74.6
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 2.0e-82 309.3 181 75.7
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.0e-82 309.3 183 74.3
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 2.0e-82 309.3 179 77.1
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.0e-82 309.3 175 77.1
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.6e-82 308.9 185 74.6
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.6e-82 308.9 179 76.5
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.6e-82 308.9 179 76.5
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.6e-82 308.9 185 73.5
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.6e-82 308.9 185 74.1
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.5e-82 308.1 185 73.5
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.5e-82 308.1 185 74.1
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.0e-81 307.0 181 75.1
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.0e-81 307.0 189 74.6
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.7e-81 306.2 181 75.1
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.7e-81 306.2 178 75.8
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.7e-81 306.2 178 75.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 5.0e-81 304.7 178 75.3
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 5.0e-81 304.7 178 75.3
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.1e-80 303.5 181 73.5
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.1e-80 303.5 182 73.1
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.9e-80 302.8 181 73.5
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.5e-80 302.4 186 72.0
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 2.5e-80 302.4 182 72.5
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 5.5e-80 301.2 185 70.8
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 7.2e-80 300.8 189 74.1
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.7e-79 298.9 195 69.7
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.7e-79 298.1 185 70.3
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.7e-79 298.1 207 66.2
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.4e-78 296.6 183 73.8
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.3e-78 295.8 179 74.9
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 8.8e-78 293.9 215 63.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 3.3e-77 292.0 176 71.0
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 4.4e-77 291.6 186 69.4
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 4.4e-77 291.6 186 69.4
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 7.5e-77 290.8 228 60.5
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.7e-77 290.4 228 60.1
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 8.2e-76 287.3 168 75.6
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.7e-74 282.3 180 70.6
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.9e-74 281.2 164 76.2
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 1.0e-73 280.4 183 69.4
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.7e-73 279.6 186 66.7
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.2e-73 279.3 177 72.9
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.2e-73 279.3 177 72.9
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 8.5e-73 277.3 158 78.5
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.1e-72 276.9 154 77.9
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 5.5e-72 274.6 183 67.2
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 9.4e-72 273.9 154 77.9
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 9.4e-72 273.9 198 65.2
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.2e-71 273.5 163 76.1
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 7.5e-69 264.2 183 68.3
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 9.8e-69 263.8 183 68.9
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.3e-68 263.5 151 75.5
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.2e-68 262.7 171 70.8
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.4e-67 259.2 209 58.4
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.1e-67 258.5 149 73.8
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 9.1e-67 257.3 149 73.2
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 9.1e-67 257.3 280 49.6
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.2e-66 256.9 148 73.6
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 4.5e-66 255.0 155 72.3
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 3.2e-64 248.8 140 75.7
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.6e-63 245.4 146 74.0
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 6.1e-63 244.6 187 59.9
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 2.4e-59 232.6 178 61.8
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.9e-56 223.0 177 59.9
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 7.3e-56 221.1 184 53.3
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 2.6e-53 212.6 194 56.7
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-52 210.3 118 77.1
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 4.9e-52 208.4 182 52.7
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.4e-51 206.8 182 56.0
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 8.0e-47 191.0 204 47.1
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 8.9e-46 187.6 208 47.1
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.9e-44 182.6 172 44.8
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.9e-44 182.6 172 44.8
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.7e-44 182.2 182 54.4
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 8.3e-44 181.0 89 89.9
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 8.3e-44 181.0 120 64.2
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 7.3e-40 167.9 205 40.5
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.3e-38 162.9 178 41.0
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-38 162.2 90 76.7
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 4.0e-38 162.2 161 49.7
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.6e-37 159.5 143 53.1
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.4e-37 158.7 202 37.6
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 2.1e-34 149.8 166 43.4
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.1e-34 149.8 93 73.1
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.0e-34 148.3 149 51.0
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.9e-27 126.7 93 64.5
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.6e-10 70.5 46 60.9
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.8e-09 67.0 44 68.2
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 5.6e-08 62.0 43 62.8
Actinidia38479 Actinidia chinensis HOM05D002335 ORTHO05D006692 9.0e-06 54.7 32 75.0


User provided reference genes

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