Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 6.7e-105 384.0 194 100.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 8.7e-105 383.6 194 99.5
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.1e-99 366.7 194 94.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.5e-93 346.3 194 90.2
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.5e-93 346.3 194 89.7
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.0e-92 343.6 194 88.7
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.7e-92 342.8 197 87.3
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.2e-92 342.4 194 87.6
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 5.0e-92 341.3 194 89.2
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 6.5e-92 340.9 194 88.7
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.4e-91 339.7 197 87.3
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.6e-90 335.1 194 88.1
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 3.6e-90 335.1 198 84.8
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 4.6e-90 334.7 194 85.6
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 4.6e-90 334.7 201 84.6
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 6.1e-90 334.3 194 87.1
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.0e-89 333.6 193 86.0
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.8e-89 332.8 201 85.6
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 2.3e-89 332.4 194 88.7
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 5.1e-89 331.3 196 86.2
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 6.7e-89 330.9 194 85.6
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 6.7e-89 330.9 197 85.3
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 6.7e-89 330.9 194 87.1
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 85.6
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.1e-88 330.1 197 86.8
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.5e-88 329.7 194 85.6
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.5e-88 329.7 201 83.6
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.5e-88 329.7 201 83.6
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.5e-88 329.7 194 88.1
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-88 329.3 194 86.6
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.3e-88 328.6 194 85.6
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.3e-88 328.6 194 86.1
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 9.7e-88 327.0 194 85.6
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 9.7e-88 327.0 198 83.8
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-87 326.6 195 85.6
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 85.6
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.2e-87 325.9 194 84.5
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.2e-87 325.9 201 82.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.2e-87 325.9 194 85.6
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.7e-87 325.1 201 83.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.7e-87 325.1 194 83.5
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 4.8e-87 324.7 194 82.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 6.3e-87 324.3 197 84.3
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 8.2e-87 323.9 201 82.1
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.4e-86 323.2 196 83.7
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.4e-86 322.4 194 85.6
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 4.1e-86 321.6 194 85.1
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.1e-86 321.6 198 82.3
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 6.9e-86 320.9 194 80.4
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 6.9e-86 320.9 199 80.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 9.1e-86 320.5 194 82.5
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 9.1e-86 320.5 194 80.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.2e-85 320.1 194 83.5
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 82.5
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.6e-85 318.9 197 81.7
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.6e-85 318.9 194 82.0
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.6e-85 318.9 194 82.0
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.4e-85 318.5 198 80.8
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 4.5e-85 318.2 192 81.8
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.5e-85 318.2 195 84.6
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.5e-85 318.2 194 84.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 5.9e-85 317.8 194 83.0
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 7.7e-85 317.4 194 82.5
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.7e-85 317.4 194 82.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.0e-84 317.0 194 82.0
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-84 316.6 201 79.1
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.3e-84 316.6 196 83.2
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.2e-84 315.8 194 82.0
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.2e-84 315.8 193 83.4
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-84 315.8 200 80.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.9e-84 315.5 194 82.0
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 8.5e-84 313.9 194 82.5
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 82.5
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.1e-83 313.5 198 81.3
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 82.0
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 82.5
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.9e-83 312.8 199 79.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.9e-83 312.8 199 79.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.9e-83 312.8 196 81.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 82.0
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.5e-83 312.4 199 78.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.2e-83 312.0 201 77.6
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.2e-83 311.6 202 78.7
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.4e-83 310.5 203 76.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-82 310.1 206 77.2
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.6e-82 309.7 199 78.9
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.6e-82 309.7 201 76.6
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 3.6e-82 308.5 199 78.4
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.9e-82 307.4 210 76.2
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.8e-81 306.2 199 77.9
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.8e-81 306.2 203 77.3
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 3.9e-81 305.1 199 77.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.9e-81 305.1 199 77.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 5.1e-81 304.7 198 78.8
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 5.1e-81 304.7 194 80.4
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 8.8e-81 303.9 199 78.4
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 8.8e-81 303.9 199 78.4
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-80 303.5 199 77.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 80.4
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.0e-80 302.8 217 72.8
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.0e-80 302.8 204 75.0
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 3.3e-80 302.0 194 79.9
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 7.4e-80 300.8 199 77.9
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 9.7e-80 300.4 200 77.0
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.7e-79 299.7 200 78.0
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.7e-79 299.7 186 81.7
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.7e-79 298.5 175 85.7
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 6.3e-79 297.7 196 75.5
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 6.3e-79 297.7 194 78.9
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.1e-78 297.0 199 75.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.3e-78 294.7 183 82.0
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 7.0e-78 294.3 198 77.8
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 7.0e-78 294.3 198 75.3
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 9.1e-78 293.9 223 70.0
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.2e-77 293.5 243 67.1
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.6e-77 293.1 200 77.0
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.9e-77 291.2 176 84.1
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.1e-75 287.0 183 81.4
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.1e-75 287.0 200 72.0
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.5e-75 286.6 200 72.0
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 3.2e-75 285.4 192 71.9
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.2e-75 285.0 205 72.2
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.2e-75 284.3 175 81.1
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 9.4e-75 283.9 193 69.9
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 8.0e-74 280.8 215 70.2
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.0e-73 278.9 214 69.2
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.0e-73 278.5 201 72.6
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 8.8e-73 277.3 194 74.2
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.5e-72 276.6 180 78.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 9.7e-72 273.9 205 72.2
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.3e-71 273.5 189 72.5
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.3e-71 273.5 192 67.7
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 4.8e-71 271.6 213 69.0
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 9.1e-70 267.3 187 75.9
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.0e-68 263.8 187 69.5
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.7e-68 263.1 185 69.7
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 5.0e-68 261.5 237 62.9
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 4.2e-67 258.5 182 73.1
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 8.8e-65 250.8 180 68.9
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.2e-64 250.4 198 63.1
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.8e-62 243.0 194 65.5
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 5.4e-62 241.5 177 71.2
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.9e-59 233.0 201 63.7
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.0e-57 227.3 153 76.5
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.3e-51 204.5 117 88.9
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.3e-47 193.7 116 81.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.2e-45 187.2 177 59.3
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.5e-45 185.7 95 98.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.2e-42 177.2 99 91.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.5e-40 167.9 99 86.9
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.2e-39 166.4 80 100.0
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 4.1e-38 162.2 188 54.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 6.0e-37 158.3 97 79.4
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.2e-30 134.4 70 95.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.6e-29 133.7 97 72.2
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.3e-28 130.6 197 46.2
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.1e-27 127.5 98 68.4
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.5e-27 126.3 70 78.6
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 4.4e-24 115.5 190 38.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.1e-22 110.9 194 39.2
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 3.2e-22 109.4 99 61.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-21 107.5 71 77.5
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.5e-19 100.5 194 40.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.1e-18 96.7 65 73.8
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 4.7e-18 95.5 71 66.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.1e-17 92.8 194 38.7
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.2e-16 90.9 62 69.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 3.2e-14 82.8 62 69.4
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-13 80.5 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.7e-13 79.7 53 75.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.7e-13 79.7 167 34.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.2e-08 64.3 72 51.4
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.1e-06 57.8 57 57.9


User provided reference genes

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