Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 0.0e+00 1094.3 534 100.0
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 5.8e-300 1033.5 534 93.3
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 6.2e-278 960.3 484 96.9
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 1.3e-267 926.0 474 92.6
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 2.4e-261 905.2 521 80.6
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 3.1e-261 904.8 521 81.2
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 2.2e-259 898.7 520 81.9
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.9e-259 898.3 521 80.8
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 6.5e-259 897.1 521 80.8
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 1.4e-258 896.0 516 82.4
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 3.0e-256 888.3 521 79.8
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 3.9e-256 887.9 520 79.4
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 5.1e-256 887.5 521 79.7
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 1.9e-255 885.6 522 80.5
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.5e-255 885.2 521 80.4
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 7.4e-255 883.6 520 79.6
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 1.6e-254 882.5 518 79.3
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 2.2e-254 882.1 522 78.5
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 2.8e-254 881.7 521 79.1
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.1e-253 879.8 518 78.2
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 1.4e-253 879.4 521 79.3
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.4e-253 878.6 524 80.2
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.4e-253 878.6 521 79.3
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 3.1e-253 878.2 549 76.0
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.1e-253 878.2 521 79.7
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 6.9e-253 877.1 517 80.3
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 9.0e-253 876.7 520 79.0
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.0e-252 875.5 520 77.3
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 2.0e-252 875.5 523 78.4
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.0e-252 875.5 521 79.1
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 2.6e-252 875.2 521 79.3
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 4.5e-252 874.4 522 79.3
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.0e-251 873.2 518 79.3
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 8.5e-251 870.2 522 79.1
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.5e-250 868.6 530 77.9
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.2e-250 868.2 530 77.7
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.3e-250 866.7 530 77.7
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.6e-249 865.9 521 77.5
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.7e-249 865.1 530 77.7
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 4.6e-249 864.4 520 77.3
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.1e-249 864.0 523 78.0
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 6.1e-249 864.0 520 77.5
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 1.3e-248 862.8 521 77.4
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 1.8e-248 862.4 521 76.6
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 2.3e-248 862.1 519 78.8
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 5.1e-248 860.9 522 77.4
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 5.1e-248 860.9 522 78.4
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 8.7e-248 860.1 522 77.8
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 8.7e-248 860.1 522 77.8
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 7.4e-247 857.1 522 77.8
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 9.7e-247 856.7 524 77.3
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 4.8e-246 854.4 521 76.6
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 4.8e-246 854.4 521 77.4
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 2.4e-245 852.0 519 76.5
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.1e-245 851.7 523 77.4
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 3.1e-245 851.7 522 76.8
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 3.1e-245 851.7 522 77.0
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 3.1e-245 851.7 522 77.0
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 3.1e-245 851.7 522 76.8
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 3.1e-245 851.7 519 76.3
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 4.1e-245 851.3 522 76.8
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 4.1e-245 851.3 522 77.0
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 5.3e-245 850.9 516 77.9
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.2e-244 849.7 519 77.3
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 1.5e-244 849.4 522 76.8
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 2.6e-244 848.6 518 77.6
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 3.4e-244 848.2 521 76.6
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.4e-244 848.2 545 73.4
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 3.4e-244 848.2 523 75.1
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 7.7e-244 847.0 519 76.9
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 7.7e-244 847.0 519 76.9
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.0e-243 846.7 521 75.8
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 1.7e-243 845.9 521 76.4
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 1.7e-243 845.9 521 76.4
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 2.2e-243 845.5 521 76.4
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 2.9e-243 845.1 521 76.4
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 2.9e-243 845.1 520 76.9
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 2.9e-243 845.1 521 77.0
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.8e-243 844.7 521 75.6
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 3.2e-242 841.6 521 77.2
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 5.5e-242 840.9 524 76.0
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 7.2e-242 840.5 516 75.8
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 9.4e-242 840.1 517 76.0
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 9.4e-242 840.1 494 78.7
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 1.2e-241 839.7 523 76.1
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 3.6e-241 838.2 519 76.3
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 4.7e-241 837.8 520 76.0
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.8e-240 835.9 531 74.2
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.8e-240 835.9 521 76.2
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.3e-240 835.5 555 72.4
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 2.0e-239 832.4 519 75.0
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 4.4e-239 831.2 520 76.0
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 5.7e-239 830.9 519 74.6
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.7e-239 830.9 521 75.4
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 9.7e-239 830.1 525 75.4
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 9.7e-239 830.1 531 74.2
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 9.7e-239 830.1 522 75.7
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.3e-238 829.7 519 75.5
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 2.2e-238 828.9 522 75.5
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 1.4e-237 826.2 553 72.2
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.8e-237 825.9 522 75.1
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 5.9e-236 820.8 524 74.4
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 6.5e-235 817.4 518 74.1
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 8.5e-235 817.0 531 73.8
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.4e-234 816.2 521 74.3
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.2e-233 813.1 522 74.5
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 2.1e-233 812.4 524 73.9
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.8e-232 809.3 521 73.7
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 1.8e-232 809.3 469 80.8
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 5.2e-232 807.7 469 81.0
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.1e-231 806.6 486 78.4
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 4.4e-231 804.7 517 73.5
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 7.4e-231 803.9 521 72.6
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 7.4e-231 803.9 521 74.7
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 6.3e-230 800.8 523 73.8
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.1e-229 800.0 521 72.6
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 1.8e-229 799.3 467 81.2
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.3e-227 793.1 477 78.0
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 8.5e-227 790.4 520 71.9
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.9e-226 789.3 520 71.7
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.2e-225 786.6 521 72.6
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 3.3e-223 778.5 519 71.5
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 2.8e-222 775.4 467 78.8
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 4.8e-222 774.6 521 72.0
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.7e-219 766.1 470 75.1
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 2.2e-219 765.8 521 69.7
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 2.2e-219 765.8 549 69.8
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 6.5e-219 764.2 519 70.7
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 6.5e-219 764.2 578 65.2
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 8.5e-219 763.8 522 70.9
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 2.5e-218 762.3 521 69.3
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 7.2e-218 760.8 519 70.3
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 2.2e-214 749.2 562 66.2
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 4.1e-213 745.0 518 70.3
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 2.5e-210 735.7 540 66.3
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.2e-209 733.4 523 66.7
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.2e-209 733.4 521 68.1
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.3e-208 729.2 521 69.3
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.8e-206 722.2 521 66.8
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 6.4e-198 694.5 521 65.5
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 6.6e-195 684.5 503 68.4
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 6.0e-188 661.4 384 79.9
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.7e-187 659.8 379 80.5
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.4e-184 650.2 380 80.0
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.3e-182 643.7 480 66.7
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 7.8e-180 634.4 479 64.7
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.0e-179 634.0 557 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 1.1e-168 597.4 468 61.1
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 4.9e-166 588.6 448 60.5
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 2.9e-158 562.8 472 57.6
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.3e-150 537.3 456 57.9
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.1e-144 517.7 352 69.9
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 2.4e-136 490.0 246 96.3
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 1.1e-130 471.1 294 76.2
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.4e-128 464.2 286 74.5
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.7e-126 457.2 291 74.6
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.2e-125 452.6 265 78.1
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 6.7e-123 445.3 293 74.7
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.8e-120 437.2 289 74.0
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.9e-102 376.7 246 69.9
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.4e-80 302.8 204 70.1
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 1.5e-58 231.5 476 31.9
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 4.6e-55 219.9 472 31.1
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 8.7e-54 215.7 134 72.4
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.7e-38 162.5 206 46.1
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.1e-35 154.1 142 52.1
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 2.2e-33 147.9 109 62.4
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.0e-25 122.5 87 69.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 9.7e-21 105.9 142 48.6
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 6.3e-20 103.2 59 72.9
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 2.4e-19 101.3 60 76.7
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 6.5e-17 93.2 144 37.5
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.2e-12 76.3 167 35.9
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 2.5e-08 64.7 55 58.2
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 3.0e-06 57.8 47 57.4
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.9e-06 57.4 37 70.3


User provided reference genes

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