Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 2.5e-170 602.1 317 100.0
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 6.1e-156 554.3 321 91.6
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.9e-149 532.7 322 89.1
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.9e-125 453.0 316 77.5
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 5.2e-115 418.3 310 72.6
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 6.2e-84 315.1 304 57.6
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.4e-80 303.9 296 58.1
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 8.7e-78 294.7 302 55.6
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 5.8e-74 282.0 302 55.0
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.7e-73 280.4 295 53.6
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 3.2e-72 276.2 310 53.9
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 3.2e-72 276.2 300 53.7
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.6e-71 273.9 306 53.6
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 3.0e-70 269.6 291 53.6
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 5.1e-70 268.9 307 52.4
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 1.1e-69 267.7 303 53.5
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 2.5e-69 266.5 311 51.8
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 6.3e-68 261.9 301 51.8
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 6.9e-67 258.5 307 51.5
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 9.0e-67 258.1 297 49.2
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.5e-66 257.3 319 49.2
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 2.0e-66 256.9 321 51.1
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.0e-66 256.9 319 50.5
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 4.5e-66 255.8 302 49.3
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.6e-66 255.0 309 51.8
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.7e-65 253.8 321 50.8
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.7e-65 253.8 310 51.3
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.5e-65 251.9 309 50.5
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 8.5e-65 251.5 301 48.5
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.1e-64 251.1 303 49.5
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 3.2e-64 249.6 307 52.8
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 4.2e-64 249.2 300 50.0
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.2e-64 249.2 301 46.8
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.2e-63 247.7 314 51.3
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 2.7e-63 246.5 301 47.2
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.3e-62 244.2 301 47.2
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.1e-62 242.3 303 47.5
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 6.7e-62 241.9 301 47.8
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 8.7e-62 241.5 303 47.2
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 8.7e-62 241.5 301 50.2
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.9e-61 240.4 305 45.6
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.5e-61 240.0 303 48.5
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 3.3e-61 239.6 312 49.4
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 4.3e-61 239.2 303 46.5
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 4.3e-61 239.2 284 50.4
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 7.4e-61 238.4 303 48.8
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 9.7e-61 238.0 301 49.5
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 9.7e-61 238.0 301 47.8
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.6e-60 237.3 301 45.2
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 2.2e-60 236.9 307 46.9
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 3.7e-60 236.1 302 49.0
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 6.3e-60 235.3 299 46.2
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.4e-59 233.4 312 49.7
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 6.9e-59 231.9 311 45.0
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.6e-58 229.9 292 46.9
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 3.4e-58 229.6 309 48.9
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 4.5e-58 229.2 323 46.4
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.0e-57 228.0 319 46.4
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.3e-57 227.6 303 46.9
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 5.0e-57 225.7 336 43.2
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.1e-56 224.6 295 46.8
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 2.5e-56 223.4 301 46.2
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 2.5e-56 223.4 288 47.9
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 5.5e-56 222.2 305 46.6
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 9.4e-56 221.5 280 47.9
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 3.6e-55 219.5 310 43.2
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 7.9e-55 218.4 305 44.9
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.0e-54 218.0 319 43.6
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.8e-54 217.2 311 42.8
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 5.1e-54 215.7 313 47.0
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 6.7e-54 215.3 288 44.8
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.6e-53 213.4 279 47.0
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 3.3e-53 213.0 312 44.9
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 4.4e-53 212.6 255 46.7
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 4.4e-53 212.6 300 45.0
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 5.7e-53 212.2 298 44.0
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 5.7e-53 212.2 301 43.2
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 1.7e-52 210.7 301 43.2
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 2.2e-52 210.3 315 43.2
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 2.2e-52 210.3 314 41.4
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.2e-52 210.3 298 44.3
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 8.2e-52 208.4 297 42.8
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 8.2e-52 208.4 297 42.8
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 8.2e-52 208.4 306 43.5
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 8.2e-52 208.4 301 43.9
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.1e-51 208.0 296 41.6
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.8e-51 207.2 309 45.6
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.4e-51 206.8 242 48.8
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 4.1e-51 206.1 314 42.4
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 6.9e-51 205.3 315 42.9
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 6.9e-51 205.3 315 41.3
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 9.1e-51 204.9 312 41.3
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 9.1e-51 204.9 314 41.7
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.5e-50 204.1 279 42.7
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 2.0e-50 203.8 314 42.0
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 2.0e-50 203.8 314 42.0
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 2.0e-50 203.8 310 40.0
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.6e-50 203.4 274 44.2
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 3.4e-50 203.0 318 40.6
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 3.4e-50 203.0 315 41.3
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.9e-50 202.2 301 44.2
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 7.7e-50 201.8 301 44.2
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 7.7e-50 201.8 299 42.1
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.7e-49 200.7 314 43.0
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.9e-48 197.2 330 40.3
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.9e-48 197.2 330 40.3
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.4e-46 191.0 289 40.1
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 5.7e-45 185.7 288 39.9
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 2.2e-44 183.7 307 41.7
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 3.7e-44 183.0 268 41.0
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 6.3e-44 182.2 260 45.0
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.1e-43 181.4 300 39.7
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.6e-42 177.6 199 55.3
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 6.5e-41 172.2 280 41.1
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 1.1e-40 171.4 280 40.7
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 5.5e-40 169.1 317 39.7
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.7e-39 166.0 278 41.4
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 6.1e-39 165.6 278 41.4
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.2e-37 161.4 279 40.5
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 7.7e-34 148.7 252 39.7
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 5.2e-30 136.0 177 49.7
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 2.4e-27 127.1 283 33.9
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.8e-23 113.6 173 41.6
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.0e-21 107.5 144 45.8
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 8.6e-17 92.0 266 30.1
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 7.3e-16 89.0 126 46.0
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.3e-12 78.2 130 42.3
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.0e-10 70.9 165 33.3


User provided reference genes

Program Settings