Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 4.5e-43 177.6 91 100.0
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.9e-38 162.2 93 91.4
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 3.8e-34 147.9 98 79.6
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 3.3e-22 108.2 99 64.6
Sed0008704 Sechium edule HOM05D006325 ORTHO05D007878 2.5e-17 92.0 60 78.3
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 7.7e-11 70.5 89 47.2
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.9e-09 65.9 76 50.0
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 1.9e-09 65.9 90 51.1
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.5e-09 65.5 78 46.2
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 3.2e-09 65.1 71 53.5
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 3.2e-09 65.1 71 53.5
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 3.2e-09 65.1 71 53.5
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 4.2e-09 64.7 70 50.0
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 5.5e-09 64.3 72 51.4
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 7.2e-09 63.9 71 52.1
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 7.2e-09 63.9 71 52.1
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 7.2e-09 63.9 80 48.8
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 7.2e-09 63.9 80 48.8
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 9.4e-09 63.5 76 52.6
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.2e-08 63.2 88 45.5
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 1.6e-08 62.8 81 44.4
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 1.6e-08 62.8 103 46.6
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 1.6e-08 62.8 74 51.4
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 3.6e-08 61.6 94 42.6
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 3.6e-08 61.6 94 44.7
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.6e-08 61.6 83 44.6
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 7.9e-08 60.5 77 45.5
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 7.9e-08 60.5 64 57.8
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 7.9e-08 60.5 87 44.8
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 7.9e-08 60.5 74 44.6
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 1.0e-07 60.1 82 43.9
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 1.0e-07 60.1 89 46.1
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 1.4e-07 59.7 57 57.9
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 1.4e-07 59.7 77 45.5
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 1.4e-07 59.7 77 45.5
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 1.4e-07 59.7 77 45.5
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.4e-07 59.7 66 53.0
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.8e-07 59.3 84 42.9
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.8e-07 59.3 64 54.7
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.8e-07 59.3 89 46.1
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.8e-07 59.3 78 46.2
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 2.3e-07 58.9 91 39.6
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 2.3e-07 58.9 85 43.5
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 2.3e-07 58.9 84 41.7
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 3.0e-07 58.5 100 43.0
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.0e-07 58.5 86 44.2
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 3.9e-07 58.2 91 45.1
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 3.9e-07 58.2 66 51.5
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 3.9e-07 58.2 84 42.9
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.1e-07 57.8 86 43.0
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 5.1e-07 57.8 72 47.2
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 5.1e-07 57.8 76 38.2
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 5.1e-07 57.8 79 45.6
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 6.7e-07 57.4 94 41.5
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 8.8e-07 57.0 83 39.8
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 8.8e-07 57.0 76 44.7
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 8.8e-07 57.0 86 43.0
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 1.1e-06 56.6 91 40.7
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.1e-06 56.6 91 41.8
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.1e-06 56.6 89 43.8
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 1.1e-06 56.6 53 56.6
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 1.1e-06 56.6 80 41.2
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.1e-06 56.6 98 41.8
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 1.5e-06 56.2 103 38.8
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.5e-06 56.2 93 44.1
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.5e-06 56.2 79 44.3
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.5e-06 56.2 89 43.8
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.5e-06 56.2 92 39.1
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 1.5e-06 56.2 76 42.1
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 1.5e-06 56.2 82 39.0
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.5e-06 56.2 76 46.1
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.5e-06 56.2 37 70.3
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 2.0e-06 55.8 103 38.8
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 2.0e-06 55.8 83 39.8
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 2.6e-06 55.5 48 58.3
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.6e-06 55.5 89 43.8
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.6e-06 55.5 89 43.8
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 2.6e-06 55.5 77 40.3
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 2.6e-06 55.5 76 46.1
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 3.3e-06 55.1 100 42.0
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 3.3e-06 55.1 76 44.7
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 3.3e-06 55.1 76 44.7
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 4.4e-06 54.7 46 60.9
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 4.4e-06 54.7 70 47.1
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 4.4e-06 54.7 82 40.2
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.4e-06 54.7 81 42.0
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.7e-06 54.3 49 59.2
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.7e-06 54.3 49 59.2
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 5.7e-06 54.3 49 59.2
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 5.7e-06 54.3 92 38.0
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.7e-06 53.5 92 39.1
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 9.7e-06 53.5 79 44.3


User provided reference genes

Program Settings