Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 0.0e+00 2590.1 1527 100.0
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 0.0e+00 2226.1 1542 83.2
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 0.0e+00 1970.3 1074 94.6
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 0.0e+00 1637.9 1537 67.5
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 4.0e-237 826.2 1602 46.7
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 1.9e-234 817.4 1555 43.6
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 5.8e-228 795.8 1687 47.2
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 3.0e-224 783.5 1589 43.7
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 1.5e-204 718.0 1596 43.5
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 2.6e-204 717.2 1656 44.6
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 2.6e-204 717.2 1656 44.6
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 2.6e-204 717.2 1656 44.6
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 1.3e-203 714.9 1595 42.3
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 4.2e-194 683.3 1513 41.1
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 2.8e-190 670.6 1564 39.6
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 8.2e-190 669.1 1635 38.1
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.6e-185 653.3 1576 39.2
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.8e-184 651.4 1577 39.1
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 3.7e-182 643.7 1530 39.9
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 1.2e-180 638.6 1630 39.3
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.6e-180 637.5 1572 40.7
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 1.0e-179 635.6 1600 43.1
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 8.5e-179 632.5 1578 39.1
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.1e-178 632.1 1712 43.5
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 5.3e-173 613.2 1611 40.5
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 3.7e-166 590.5 1623 38.0
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.2e-161 575.5 1576 37.4
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 3.0e-160 570.9 1580 39.3
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 6.8e-160 569.7 1567 39.1
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.4e-157 562.0 1581 39.5
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 7.0e-157 559.7 1589 36.2
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.6e-156 558.5 1565 39.0
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 1.0e-155 555.8 1582 36.9
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 4.9e-150 537.0 1572 37.4
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 4.5e-148 530.4 1834 39.7
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 5.4e-141 506.9 1616 36.6
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.3e-139 501.5 1565 37.8
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 7.3e-138 496.5 1555 38.8
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.6e-137 495.4 1619 38.9
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 1.4e-136 492.3 1567 37.8
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 6.8e-136 490.0 1550 37.2
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 7.5e-135 486.5 1571 39.0
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.0e-132 478.4 1771 38.6
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 2.0e-132 478.4 1630 36.1
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.5e-130 471.5 1810 36.2
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 2.1e-129 468.4 1567 38.2
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 2.8e-129 468.0 1643 38.6
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 8.9e-128 463.0 1616 38.7
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 9.8e-127 459.5 1595 37.8
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 1.3e-123 449.1 1625 36.3
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 6.6e-123 446.8 1588 38.4
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 2.5e-122 444.9 1579 36.3
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.1e-120 439.5 1621 37.9
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 3.1e-120 438.0 1592 34.9
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 3.1e-120 438.0 1592 33.6
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 6.8e-120 436.8 1632 33.0
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 1.5e-119 435.6 1576 34.5
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 7.6e-119 433.3 1579 33.3
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 9.2e-117 426.4 1558 37.7
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 9.9e-111 406.4 1575 35.4
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 4.9e-110 404.1 1481 31.3
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.1e-108 398.7 1209 34.7
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.3e-104 384.0 1261 41.0
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 9.0e-104 383.3 1569 30.7
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 4.9e-102 377.5 1046 40.7
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 3.2e-101 374.8 1589 33.9
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 2.7e-100 371.7 1142 34.7
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 2.3e-99 368.6 1601 33.2
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 8.7e-99 366.7 1561 35.0
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 4.3e-98 364.4 1569 33.7
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 2.0e-95 355.5 1592 31.0
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 7.1e-93 347.1 1572 35.5
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 2.5e-85 322.0 416 50.2
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.2e-85 321.6 287 66.6
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 1.6e-84 319.3 688 56.1
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.7e-84 318.5 989 33.3
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 4.6e-84 317.8 1570 34.1
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.5e-82 312.8 1087 32.9
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 4.3e-82 311.2 1548 30.1
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 1.4e-80 306.2 1181 32.4
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 5.9e-79 300.8 1221 33.1
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.3e-78 299.7 1634 28.5
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.7e-78 299.3 1724 35.0
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 2.9e-78 298.5 230 66.1
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 2.1e-76 292.4 1617 32.3
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 7.9e-76 290.4 1124 32.6
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 5.7e-74 284.3 1589 27.6
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 2.8e-73 282.0 227 64.3
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 2.4e-72 278.9 1145 35.3
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 4.6e-68 264.6 171 73.7
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 3.7e-65 255.0 287 54.7
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 8.2e-65 253.8 301 52.5
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 5.9e-63 247.7 140 78.6
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 8.2e-57 227.3 226 51.3
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 2.6e-55 222.2 1733 32.0
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 1.9e-53 216.1 715 31.2
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 2.3e-51 209.1 1131 29.5
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.6e-50 205.7 472 38.6
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 3.3e-50 205.3 1246 27.9
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.3e-49 203.4 731 30.2
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 3.1e-48 198.7 576 33.9
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 5.3e-48 198.0 187 55.6
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 7.7e-47 194.1 102 85.3
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 8.5e-46 190.7 103 74.8
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 1.9e-45 189.5 193 52.8
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 3.6e-44 185.3 1136 28.9
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 2.3e-43 182.6 170 61.8
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 2.0e-42 179.5 411 35.3
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 1.4e-40 173.3 179 52.5
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.0e-38 167.2 173 51.4
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 4.4e-34 151.8 334 36.8
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 9.8e-34 150.6 227 43.2
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 1.3e-33 150.2 150 52.7
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 1.7e-33 149.8 203 45.3
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 7.0e-32 144.4 109 67.0
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 9.2e-32 144.1 72 88.9
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 9.2e-32 144.1 72 88.9
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 6.6e-30 137.9 704 32.7
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 2.0e-26 126.3 648 26.5
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 2.2e-25 122.9 127 55.1
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.9e-21 109.8 96 59.4
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 6.0e-15 88.2 140 27.1
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 1.0e-14 87.4 131 32.8
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.0e-14 87.4 729 27.7
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 1.3e-14 87.0 158 38.0
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 5.0e-14 85.1 340 27.1
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 1.1e-13 84.0 115 33.0
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-13 83.6 196 28.1
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 2.5e-13 82.8 114 34.2
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 5.6e-13 81.6 114 33.3
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 9.5e-13 80.9 56 66.1
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 3.2e-08 65.9 43 67.4
C09p51180 Brassica napus HOM05D012589 ORTHO05D024353 7.8e-07 61.2 184 31.5
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 1.3e-06 60.5 806 34.4


User provided reference genes

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