Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 2.0e-218 762.7 551 100.0
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 8.9e-171 604.4 435 84.1
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 1.2e-146 524.2 352 80.4
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 1.7e-116 424.1 355 66.5
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 8.8e-102 375.2 369 61.8
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 1.5e-69 268.1 359 48.2
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 2.2e-68 264.2 351 48.4
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 3.0e-65 253.8 388 46.1
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 6.6e-65 252.7 342 47.4
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 5.6e-64 249.6 341 49.0
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 7.3e-64 249.2 338 48.2
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 7.3e-64 249.2 358 47.5
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 3.6e-63 246.9 357 48.5
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.4e-62 245.0 350 48.3
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 1.7e-60 238.0 376 45.2
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 3.7e-60 236.9 328 46.0
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 4.1e-59 233.4 341 45.7
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 7.8e-58 229.2 375 44.3
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 1.7e-57 228.0 373 43.7
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.3e-57 227.6 350 45.4
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 2.3e-57 227.6 407 41.8
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 3.9e-57 226.9 334 47.3
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 3.6e-55 220.3 396 41.7
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 6.4e-52 209.5 339 43.4
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.9e-51 208.0 327 45.3
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 2.4e-51 207.6 376 41.0
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 4.1e-51 206.8 368 39.9
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 5.4e-51 206.5 351 43.3
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 5.4e-51 206.5 344 44.8
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 3.5e-50 203.8 430 39.5
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 3.5e-50 203.8 345 44.3
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 3.0e-49 200.7 365 40.3
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 1.1e-48 198.7 375 42.4
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.6e-47 194.9 404 38.6
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.2e-45 188.7 398 38.7
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 1.5e-45 188.3 395 37.2
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 4.4e-45 186.8 344 41.3
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.7e-44 184.9 359 39.6
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 2.2e-44 184.5 320 41.6
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 6.4e-44 183.0 377 39.5
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 8.4e-44 182.6 347 39.2
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 8.4e-44 182.6 391 39.9
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 1.9e-43 181.4 345 42.0
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 1.9e-43 181.4 495 36.2
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 3.2e-43 180.6 350 40.0
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 3.2e-43 180.6 527 33.2
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 4.2e-43 180.3 332 40.1
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 1.2e-42 178.7 331 40.5
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 2.7e-42 177.6 344 39.8
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 1.0e-41 175.6 281 40.2
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 1.7e-41 174.9 397 39.0
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 3.0e-41 174.1 383 37.9
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 3.0e-41 174.1 369 39.6
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 3.9e-41 173.7 345 41.4
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 1.5e-40 171.8 393 39.7
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 2.5e-40 171.0 335 38.2
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 4.3e-40 170.2 330 40.0
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 1.6e-39 168.3 384 38.5
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 1.6e-39 168.3 341 37.8
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 1.6e-39 168.3 367 38.1
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 4.8e-39 166.8 376 36.2
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 1.1e-38 165.6 336 38.1
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 1.4e-38 165.2 338 38.5
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 5.3e-38 163.3 348 37.1
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 9.0e-38 162.5 323 39.0
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 1.2e-37 162.2 338 38.2
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 3.4e-37 160.6 339 37.5
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 7.6e-37 159.5 337 37.7
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 9.9e-37 159.1 336 38.4
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 9.9e-37 159.1 329 37.4
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.2e-36 157.9 527 31.5
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 4.9e-36 156.8 396 35.4
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 1.9e-35 154.8 293 39.6
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 1.9e-35 154.8 370 38.1
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 4.2e-35 153.7 334 36.2
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 4.2e-35 153.7 401 35.7
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 5.4e-35 153.3 293 39.2
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 5.4e-35 153.3 293 39.2
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 7.1e-35 152.9 376 37.8
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 2.1e-34 151.4 396 34.6
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 1.0e-33 149.1 293 39.2
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 3.0e-33 147.5 295 36.3
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 2.5e-32 144.4 329 38.6
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 4.3e-32 143.7 349 33.5
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 6.2e-31 139.8 290 39.7
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.4e-30 138.7 504 30.8
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 3.1e-30 137.5 347 36.9
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 1.5e-29 135.2 273 40.7
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 7.6e-29 132.9 344 39.0
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 2.9e-28 131.0 174 51.1
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 3.8e-28 130.6 316 37.0
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.9e-28 130.2 527 29.8
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 8.4e-28 129.4 332 33.4
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 1.1e-27 129.0 151 51.7
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 3.2e-27 127.5 348 33.6
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.2e-26 125.6 524 28.4
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.2e-26 125.6 311 38.3
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 2.7e-26 124.4 298 37.9
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 4.6e-26 123.6 201 43.3
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 1.3e-25 122.1 389 32.1
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 2.3e-25 121.3 407 30.0
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 5.1e-25 120.2 104 62.5
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 5.1e-25 120.2 104 62.5
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 8.7e-25 119.4 438 30.8
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 4.3e-24 117.1 277 36.1
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 7.4e-24 116.3 390 30.5
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 2.1e-23 114.8 354 34.2
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 2.8e-23 114.4 368 32.9
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 3.7e-23 114.0 148 48.6
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 1.1e-22 112.5 354 34.2
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 4.0e-22 110.5 364 29.1
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 5.3e-22 110.2 406 28.8
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.2e-21 109.0 261 36.0
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 2.0e-21 108.2 511 26.0
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 4.9e-20 103.6 116 54.3
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 3.2e-19 100.9 335 28.4
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 6.0e-18 96.7 431 28.3
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.1e-16 92.4 305 30.8
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 2.2e-15 88.2 342 29.5
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 6.3e-15 86.7 329 30.7
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 3.8e-12 77.4 137 38.7
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 7.9e-10 69.7 94 50.0
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 7.9e-10 69.7 94 50.0
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 1.4e-09 68.9 62 58.1
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 1.8e-09 68.6 302 29.8
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 3.0e-09 67.8 110 39.1
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 5.1e-09 67.0 312 27.2
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 7.4e-08 63.2 419 24.3
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 7.4e-08 63.2 104 40.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 2.8e-07 61.2 95 40.0
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 4.8e-07 60.5 183 30.6
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 4.8e-07 60.5 153 30.7
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 6.3e-07 60.1 229 31.0
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 6.3e-07 60.1 134 36.6
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 4.1e-06 57.4 197 33.5
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 5.3e-06 57.0 193 29.0
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.9e-06 56.6 112 39.3
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 6.9e-06 56.6 81 43.2
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 6.9e-06 56.6 81 43.2
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 9.1e-06 56.2 73 43.8


User provided reference genes

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