Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 7.4e-178 627.1 315 100.0
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 2.6e-146 522.3 366 75.4
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.1e-132 476.1 327 77.7
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 5.7e-130 468.0 312 76.6
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.3e-102 377.1 321 61.7
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.1e-101 374.0 323 60.7
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 3.6e-100 369.0 312 61.5
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 4.7e-100 368.6 316 60.1
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 1.4e-99 367.1 315 60.0
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 8.9e-99 364.4 312 60.9
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.5e-98 363.6 312 60.9
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.5e-98 363.6 309 61.2
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.6e-98 362.8 309 61.2
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 3.4e-98 362.5 316 61.1
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.7e-97 360.1 315 61.0
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 6.4e-97 358.2 316 57.6
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 8.3e-97 357.8 316 57.9
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.9e-96 356.7 337 57.0
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.1e-96 355.5 313 59.4
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.6e-95 353.6 314 60.2
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 2.7e-95 352.8 311 57.9
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 2.7e-95 352.8 316 57.6
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 2.3e-94 349.7 261 64.8
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 6.6e-94 348.2 316 57.6
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 1.5e-93 347.1 328 56.4
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.9e-93 346.7 332 57.2
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 2.5e-93 346.3 265 64.5
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 2.5e-93 346.3 309 59.9
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 5.6e-93 345.1 314 59.9
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.2e-92 344.0 313 56.2
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.2e-92 344.0 317 56.5
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.6e-92 342.4 317 57.4
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 4.7e-92 342.0 271 62.0
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 6.2e-92 341.7 316 56.3
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 8.1e-92 341.3 319 56.1
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.1e-91 340.9 262 64.1
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.1e-91 340.9 325 56.3
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 5.2e-91 338.6 311 58.2
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 1.2e-90 337.4 313 56.2
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 2.0e-90 336.7 304 56.9
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 2.6e-90 336.3 319 55.5
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 9.9e-90 334.3 271 62.0
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.2e-89 333.2 313 55.6
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 3.7e-89 332.4 270 60.0
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.9e-89 332.0 315 55.6
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 6.4e-89 331.6 314 54.1
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.1e-88 330.9 312 55.4
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 5.4e-88 328.6 311 55.3
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 9.2e-88 327.8 309 55.7
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.2e-87 327.4 314 55.4
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 1.6e-87 327.0 309 54.4
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.1e-87 326.6 263 60.8
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 2.1e-87 326.6 349 51.6
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 2.7e-87 326.2 319 55.8
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 3.5e-87 325.9 312 56.1
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.7e-86 323.6 309 53.7
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.0e-86 322.8 311 55.9
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 3.0e-86 322.8 319 55.8
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 8.6e-86 321.2 315 55.6
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 8.6e-86 321.2 309 53.4
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.1e-85 320.9 319 53.6
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 3.3e-85 319.3 315 56.5
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 3.3e-85 319.3 314 52.2
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 3.3e-85 319.3 292 58.2
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 3.3e-85 319.3 325 56.0
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 5.6e-85 318.5 318 55.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 7.3e-85 318.2 321 55.5
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 9.5e-85 317.8 309 53.1
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 3.6e-84 315.8 309 53.7
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 4.7e-84 315.5 282 58.5
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 8.1e-84 314.7 326 55.5
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.1e-83 314.3 313 54.0
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 1.4e-83 313.9 315 53.0
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.8e-83 313.5 326 54.3
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.8e-83 313.5 326 54.3
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.8e-83 313.5 326 54.3
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 2.4e-83 313.2 326 55.2
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.8e-83 311.6 281 58.7
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 8.9e-83 311.2 264 61.0
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.2e-82 310.8 285 58.9
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 1.3e-81 307.4 327 53.8
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.3e-81 307.4 326 53.4
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 4.9e-81 305.4 298 56.7
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.6e-79 300.4 317 53.6
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 7.8e-79 298.1 266 59.0
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.3e-78 296.6 266 58.6
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 2.5e-77 293.1 311 53.7
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 3.3e-77 292.7 265 56.2
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 9.6e-77 291.2 255 62.0
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 9.6e-77 291.2 307 54.1
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 1.6e-76 290.4 237 60.3
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.6e-76 290.4 306 52.9
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 3.6e-76 289.3 318 51.9
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 6.2e-76 288.5 295 54.9
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 6.2e-76 288.5 295 54.9
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 6.2e-76 288.5 295 54.9
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 3.4e-74 282.7 264 56.1
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 1.3e-73 280.8 271 54.2
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.3e-73 280.8 262 55.3
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 4.9e-73 278.9 253 60.1
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.4e-72 277.3 267 55.4
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.5e-69 267.3 264 53.0
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 3.4e-66 256.1 210 60.0
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.2e-65 253.4 457 37.0
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.9e-61 240.4 237 53.6
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.3e-60 237.7 256 48.4
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.4e-59 234.2 269 51.7
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 6.4e-57 225.3 257 46.3
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.9e-56 223.8 220 55.0
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.2e-56 223.0 271 50.6
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.3e-54 216.9 266 44.7
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 3.4e-50 203.0 174 60.9
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 7.9e-47 191.8 251 42.6
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 7.9e-47 191.8 161 55.9
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.8e-46 190.7 167 58.1
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.4e-38 164.5 115 63.5
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.2e-36 157.1 139 61.2
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.8e-36 156.8 234 42.3
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.4e-35 154.5 150 52.0
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 2.0e-34 150.6 152 48.7
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.0e-33 148.3 256 38.3
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.3e-33 147.9 125 61.6
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.2e-33 147.1 81 82.7
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 7.9e-31 138.7 129 58.9
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 7.9e-31 138.7 76 81.6
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 3.0e-30 136.7 88 69.3
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 1.7e-25 120.9 67 85.1
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 3.8e-25 119.8 82 70.7
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 3.8e-25 119.8 82 70.7
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.8e-25 119.8 82 70.7
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 2.5e-24 117.1 115 52.2
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 1.2e-18 98.2 87 59.8
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 5.0e-17 92.8 72 56.9
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.5e-16 91.3 65 69.2
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 2.1e-15 87.4 74 58.1
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 8.0e-15 85.5 41 90.2
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 5.2e-14 82.8 48 75.0
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 5.7e-13 79.3 93 46.2
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 2.8e-12 77.0 84 47.6
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.8e-12 77.0 42 81.0
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.4e-11 73.9 81 50.6
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.7e-10 68.9 208 29.8
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 1.3e-09 68.2 53 62.3
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.9e-08 64.3 220 25.9
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 6.1e-07 59.3 46 56.5


User provided reference genes

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