Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G033720 Cucumis sativus L. HOM05D034807 ORTHO05D034786 2.2e-213 745.3 374 100.0
MELO3C020693.2 Cucumis melo HOM05D034807 ORTHO05D034786 1.6e-142 510.0 295 90.5
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 2.3e-13 80.9 64 56.2
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 7.5e-12 75.9 50 56.0
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 9.8e-12 75.5 57 49.1
TWI60G1066 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 2.2e-11 74.3 53 52.8
TPR.G12267 Trifolium pratense HOM05D008195 ORTHO05D010605 1.4e-10 71.6 49 55.1
MELO3C002025.2 Cucumis melo HOM05D007909 ORTHO05D000743 1.8e-10 71.2 49 49.0
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 3.2e-10 70.5 52 50.0
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 4.1e-10 70.1 50 50.0
QL10p019356 Quercus lobata HOM05D001093 ORTHO05D010605 5.4e-10 69.7 72 45.8
TWI60G0473 Tripterygium wilfordii HOM05D007909 ORTHO05D000743 5.4e-10 69.7 54 51.9
Actinidia35035 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.6e-09 68.2 51 54.9
Aqoxy3G03627 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 3.5e-09 67.0 61 50.8
Lj1g0000797 Lotus japonicus HOM05D007909 ORTHO05D000743 3.5e-09 67.0 51 49.0
Oeu047262.2 Olea europaea HOM05D001093 ORTHO05D000743 4.5e-09 66.6 51 49.0
ClCG04G011830 Citrullus lanatus HOM05D000020 ORTHO05D000743 7.8e-09 65.9 49 49.0
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.0e-08 65.5 51 47.1
CARHR205180 Cardamine hirsuta HOM05D009441 ORTHO05D010605 1.0e-08 65.5 59 44.1
Nn3g17441 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.0e-08 65.5 55 45.5
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.3e-08 65.1 51 51.0
arahy.Tifrunner.gnm1.ann1.7R0RVH Arachis hypogaea HOM05D001093 ORTHO05D000743 1.3e-08 65.1 51 51.0
arahy.Tifrunner.gnm1.ann1.ER6SHV Arachis hypogaea HOM05D008195 ORTHO05D000743 1.3e-08 65.1 51 51.0
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 1.3e-08 65.1 53 50.9
Gohir.A12G182300 Gossypium hirsutum HOM05D004287 ORTHO05D004569 1.3e-08 65.1 64 50.0
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 1.7e-08 64.7 100 37.0
Sed0028074 Sechium edule HOM05D007909 ORTHO05D000743 1.7e-08 64.7 49 51.0
Psat0s231g0040 Pisum sativum HOM05D001093 ORTHO05D000743 2.3e-08 64.3 51 43.1
Atru.chr9.429 Acer truncatum HOM05D007909 ORTHO05D000743 2.9e-08 63.9 51 47.1
AT5G08005 Arabidopsis thaliana HOM05D009441 ORTHO05D010605 3.9e-08 63.5 53 49.1
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 3.9e-08 63.5 57 52.6
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 3.9e-08 63.5 50 52.0
A10p28620 Brassica napus HOM05D009441 ORTHO05D010605 5.0e-08 63.2 59 42.4
ClCG03G011820 Citrullus lanatus HOM05D034807 ORTHO05D034786 5.0e-08 63.2 92 39.1
Haze_07715 Corylus avellana HOM05D008195 ORTHO05D010605 5.0e-08 63.2 55 43.6
CsaV3_1G005950 Cucumis sativus L. HOM05D007909 ORTHO05D000743 5.0e-08 63.2 49 44.9
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 5.0e-08 63.2 50 52.0
Phvul.009G191600 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 6.6e-08 62.8 58 48.3
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 6.6e-08 62.8 67 46.3
Carub.0006s0689 Capsella rubella HOM05D009441 ORTHO05D010605 8.6e-08 62.4 53 45.3
Cc00_g03820 Coffea canephora HOM05D045766 ORTHO05D010605 8.6e-08 62.4 49 51.0
AagrBONN_evm.TU.Sc2ySwM_117.925 Anthoceros agrestis HOM05D001093 ORTHO05D000743 1.1e-07 62.0 47 46.8
Prupe.5G204000 Prunus persica HOM05D001093 ORTHO05D010605 1.1e-07 62.0 51 49.0
Glyma.04G163100 Glycine max HOM05D007909 ORTHO05D000743 1.5e-07 61.6 62 41.9
unitig_749.g13437 Utricularia gibba HOM05D008195 ORTHO05D000743 1.5e-07 61.6 137 29.2
C09p68910 Brassica napus HOM05D009441 ORTHO05D010605 1.9e-07 61.2 70 38.6
Sabra03G0060600 Salix brachista HOM05D001093 ORTHO05D000743 1.9e-07 61.2 55 45.5
Sp6g34940 Schrenkiella parvula HOM05D009441 ORTHO05D010605 1.9e-07 61.2 59 37.3
BcaC09g51595 Brassica carinata HOM05D001093 ORTHO05D011195 2.5e-07 60.8 55 43.6
BolC1t01130H Brassica oleracea HOM05D020533 ORTHO05D011195 2.5e-07 60.8 55 43.6
Hma1.2p1_1063F.1_g253500 Hydrangea macrophylla HOM05D001093 ORTHO05D000743 2.5e-07 60.8 50 52.0
Potri.003G091000 Populus trichocarpa HOM05D001093 ORTHO05D000743 2.5e-07 60.8 55 45.5
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 2.5e-07 60.8 49 51.0
Sabra14G0029200 Salix brachista HOM05D007909 ORTHO05D000743 2.5e-07 60.8 58 46.6
arahy.Tifrunner.gnm1.ann1.BD8AAL Arachis hypogaea HOM05D001093 ORTHO05D000743 3.3e-07 60.5 115 32.2
BcaC03g18076 Brassica carinata HOM05D009441 ORTHO05D010605 3.3e-07 60.5 54 40.7
BolC2t12184H Brassica oleracea HOM05D009441 ORTHO05D010605 3.3e-07 60.5 54 40.7
BraA01t00935Z Brassica rapa HOM05D001093 ORTHO05D011195 4.3e-07 60.1 46 47.8
Duzib068G1103 Durio zibethinus HOM05D001093 ORTHO05D000743 4.3e-07 60.1 47 51.1
Gorai.008G198700 Gossypium raimondii HOM05D008195 ORTHO05D000743 4.3e-07 60.1 83 38.6
Lsat_1_v5_gn_1_13501 Lactuca sativa HOM05D001093 ORTHO05D010605 4.3e-07 60.1 86 33.7
SMO347G0226 Selaginella moellendorffii HOM05D001093 ORTHO05D000743 4.3e-07 60.1 76 35.5
SEGI_04156 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 4.3e-07 60.1 98 34.7
Migut.I00329 Erythranthe guttata HOM05D001093 ORTHO05D000743 5.6e-07 59.7 50 48.0
Gohir.A12G182333 Gossypium hirsutum HOM05D008195 ORTHO05D000743 5.6e-07 59.7 87 33.3
Zm00001eb092100 Zea mays HOM05D001093 ORTHO05D000743 5.6e-07 59.7 72 34.7
MSTRG.4449 Avicennia marina HOM05D001093 ORTHO05D010605 9.5e-07 58.9 55 40.0
THA.LOC104798461 Tarenaya hassleriana HOM05D001093 ORTHO05D000743 9.5e-07 58.9 46 41.3
VMungo1309G2690 Vigna mungo HOM05D008195 ORTHO05D000743 9.5e-07 58.9 73 35.6
A01p09910 Brassica napus HOM05D001093 ORTHO05D011195 1.2e-06 58.5 46 45.7
Gohir.D12G185200 Gossypium hirsutum HOM05D004287 ORTHO05D004569 1.2e-06 58.5 144 31.2
Gohir.D12G185300 Gossypium hirsutum HOM05D008195 ORTHO05D000743 1.2e-06 58.5 121 31.4
Gorai.008G198600 Gossypium raimondii HOM05D004287 ORTHO05D004569 1.2e-06 58.5 144 31.2
Potri.014G040100 Populus trichocarpa HOM05D007909 ORTHO05D000743 1.2e-06 58.5 58 44.8
Zm00001eb390530 Zea mays HOM05D001093 ORTHO05D000743 1.2e-06 58.5 83 36.1
Aa31LG3G18530 Aethionema arabicum HOM05D000016 ORTHO05D000487 1.6e-06 58.2 51 39.2
AT4G17850 Arabidopsis thaliana HOM05D001093 ORTHO05D011195 1.6e-06 58.2 55 41.8
arahy.Tifrunner.gnm1.ann1.A42YA2 Arachis hypogaea HOM05D001093 ORTHO05D000743 1.6e-06 58.2 190 27.4
Ciclev10020157m.g Citrus clementina HOM05D001093 ORTHO05D010605 1.6e-06 58.2 48 52.1
Thhalv10026928m.g Eutrema salsugineum HOM05D020533 ORTHO05D011195 1.6e-06 58.2 46 50.0
FvH4_4g13550 Fragaria vesca HOM05D008195 ORTHO05D010605 1.6e-06 58.2 59 42.4
TAR264G0006 Trochodendron aralioides HOM05D001093 ORTHO05D000743 1.6e-06 58.2 58 36.2
HPP92_014619 Vanilla planifolia HOM05D001093 ORTHO05D000743 1.6e-06 58.2 50 46.0
COL.COLO4_17047 Corchorus olitorius HOM05D001093 ORTHO05D000743 2.1e-06 57.8 47 48.9
FvH4_5g13940 Fragaria vesca HOM05D008195 ORTHO05D000743 2.1e-06 57.8 57 43.9
Gohir.A12G208600 Gossypium hirsutum HOM05D001093 ORTHO05D000743 2.1e-06 57.8 47 48.9
Gohir.D12G211200 Gossypium hirsutum HOM05D001093 ORTHO05D000743 2.1e-06 57.8 47 48.9
Gorai.008G226700 Gossypium raimondii HOM05D001093 ORTHO05D000743 2.1e-06 57.8 47 48.9
HanXRQChr02g0044731 Helianthus annuus HOM05D001093 ORTHO05D000743 2.1e-06 57.8 54 42.6
Lj2g0016244 Lotus japonicus HOM05D001093 ORTHO05D000743 2.1e-06 57.8 71 36.6
QL03p074129 Quercus lobata HOM05D007909 ORTHO05D000743 2.1e-06 57.8 51 45.1
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 2.1e-06 57.8 57 42.1
PGSC0003DMG400016768 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.1e-06 57.8 54 44.4
ATR0049G075 Amborella trichopoda HOM05D001093 ORTHO05D000743 2.8e-06 57.4 50 46.0
CANSAT80G0086 Cannabis sativa HOM05D007909 ORTHO05D000743 2.8e-06 57.4 103 33.0
FAN17G0179 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.8e-06 57.4 58 41.4
Nn1g00516 Nelumbo nucifera HOM05D001093 ORTHO05D000743 2.8e-06 57.4 50 48.0
Prupe.5G038800 Prunus persica HOM05D001093 ORTHO05D000743 2.8e-06 57.4 47 51.1
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 2.8e-06 57.4 54 42.6
BcaNung00050 Brassica carinata HOM05D020533 ORTHO05D011195 3.6e-06 57.0 55 41.8
A02p41420 Brassica napus HOM05D009441 ORTHO05D010605 3.6e-06 57.0 56 35.7
BraA02t09084Z Brassica rapa HOM05D009441 ORTHO05D010605 3.6e-06 57.0 54 40.7
BraA03t13799Z Brassica rapa HOM05D007909 ORTHO05D010605 3.6e-06 57.0 101 29.7
BraA10t44911Z Brassica rapa HOM05D009441 ORTHO05D010605 3.6e-06 57.0 48 45.8
ClCG04G004900 Citrullus lanatus HOM05D018426 ORTHO05D151443 3.6e-06 57.0 190 27.4
Duzib084G1408 Durio zibethinus HOM05D001093 ORTHO05D000743 3.6e-06 57.0 47 48.9
FAN07G2119 Fragaria x ananassa HOM05D008195 ORTHO05D010605 3.6e-06 57.0 58 43.1
HPP92_020960 Vanilla planifolia HOM05D001093 ORTHO05D000743 3.6e-06 57.0 50 46.0
BolC2t12185H Brassica oleracea HOM05D009441 ORTHO05D010605 4.7e-06 56.6 50 38.0
CSS0022126 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 4.7e-06 56.6 47 48.9
CSS0033439 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 4.7e-06 56.6 47 48.9
Duzib205G0279 Durio zibethinus HOM05D001093 ORTHO05D000743 4.7e-06 56.6 47 48.9
Lj8A299T13 Lonicera japonica HOM05D001093 ORTHO05D000743 4.7e-06 56.6 71 35.2
Thecc.03G228500 Theobroma cacao HOM05D001093 ORTHO05D000743 4.7e-06 56.6 47 48.9
Thecc.07G043300 Theobroma cacao HOM05D008181 ORTHO05D010459 4.7e-06 56.6 53 43.4
AL6G18350 Arabidopsis lyrata HOM05D009441 ORTHO05D010605 6.1e-06 56.2 48 43.8
Cfa012430 Carpinus fangiana HOM05D001093 ORTHO05D000743 6.1e-06 56.2 47 48.9
Haze_08239 Corylus avellana HOM05D001093 ORTHO05D000743 6.1e-06 56.2 47 48.9
Glyma.12G014900 Glycine max HOM05D001093 ORTHO05D000743 6.1e-06 56.2 115 33.0
HanXRQChr03g0093301 Helianthus annuus HOM05D003505 ORTHO05D002366 6.1e-06 56.2 65 38.5
Hma1.2p1_0649F.1_g195150 Hydrangea macrophylla HOM05D001093 ORTHO05D000743 6.1e-06 56.2 55 45.5
Hma1.2p1_1063F.1_g253510 Hydrangea macrophylla HOM05D001093 ORTHO05D000743 6.1e-06 56.2 152 30.3
MBI04_g22936_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D000743 6.1e-06 56.2 50 44.0
MBI19_g34071_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 6.1e-06 56.2 52 38.5
MBI19_g36253_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 6.1e-06 56.2 52 38.5
Mapoly0047s0113 Marchantia polymorpha HOM05D001093 ORTHO05D000743 6.1e-06 56.2 49 44.9
Zm00001eb024600 Zea mays HOM05D001093 ORTHO05D000743 6.1e-06 56.2 87 32.2
AL7G36680 Arabidopsis lyrata HOM05D001093 ORTHO05D011195 8.0e-06 55.8 55 38.2
EL10Ac5g11120 Beta vulgaris HOM05D015602 ORTHO05D006373 8.0e-06 55.8 91 35.2
C02p61360 Brassica napus HOM05D009441 ORTHO05D010605 8.0e-06 55.8 55 34.5
BraA02t09085Z Brassica rapa HOM05D009441 ORTHO05D010605 8.0e-06 55.8 55 34.5
FvH4_5g13930 Fragaria vesca HOM05D007909 ORTHO05D000743 8.0e-06 55.8 60 46.7
PSO801G0246 Papaver somniferum HOM05D001093 ORTHO05D000743 8.0e-06 55.8 165 29.7
Pp3c5_28530 Physcomitrium patens HOM05D001093 ORTHO05D000743 8.0e-06 55.8 50 46.0
QL03p074219 Quercus lobata HOM05D007909 ORTHO05D000743 8.0e-06 55.8 51 43.1
Sc07g0008720 Simmondsia chinensis HOM05D001093 ORTHO05D000743 8.0e-06 55.8 49 46.9
TAR629G2884 Trochodendron aralioides HOM05D001093 ORTHO05D000743 8.0e-06 55.8 50 44.0
Zm00001eb268880 Zea mays HOM05D001093 ORTHO05D000743 8.0e-06 55.8 60 41.7


User provided reference genes

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