Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 3.2e-257 891.3 475 100.0
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.2e-224 783.1 440 96.4
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 2.2e-218 762.3 441 93.7
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 6.1e-192 674.5 439 84.5
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.5e-134 483.8 446 63.5
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 4.6e-123 445.7 460 60.0
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 8.6e-122 441.4 469 56.3
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 9.5e-121 438.0 449 61.5
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.6e-120 437.2 449 61.2
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.2e-118 431.0 449 56.8
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 7.6e-118 428.3 452 60.0
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 7.6e-118 428.3 450 60.0
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 6.4e-117 425.2 458 58.5
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 9.2e-116 421.4 449 58.8
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 1.2e-115 421.0 441 60.5
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 7.8e-115 418.3 455 55.8
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 8.6e-114 414.8 451 59.9
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 4.3e-113 412.5 449 57.9
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.8e-112 409.8 457 59.3
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.1e-111 407.9 455 55.4
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 1.4e-111 407.5 445 57.8
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 9.0e-111 404.8 509 54.0
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 2.9e-109 399.8 467 53.5
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 3.8e-109 399.4 424 56.4
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.0e-106 391.3 445 57.8
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.0e-106 389.8 446 55.2
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.9e-105 387.1 430 55.3
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 9.6e-105 384.8 445 54.2
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.8e-103 380.6 323 65.3
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.4e-103 380.2 439 57.2
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 5.3e-103 379.0 394 58.1
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 9.0e-103 378.3 378 58.7
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.0e-102 377.1 452 55.8
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.4e-102 376.3 454 54.4
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 2.2e-101 373.6 475 52.2
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.7e-99 366.7 449 52.8
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 7.9e-99 365.2 402 55.5
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.0e-98 364.8 397 56.2
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 1.5e-97 360.9 460 50.2
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 2.1e-96 357.1 442 55.0
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 8.1e-96 355.1 458 50.7
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 4.0e-95 352.8 458 50.9
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 5.3e-95 352.4 445 54.6
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 9.0e-95 351.7 456 52.2
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.6e-94 350.1 310 63.9
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 2.2e-93 347.1 458 51.1
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 8.4e-93 345.1 452 50.7
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 8.4e-93 345.1 475 47.2
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.9e-92 344.0 443 52.8
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 9.3e-92 341.7 458 50.0
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 7.9e-91 338.6 453 50.3
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 7.9e-91 338.6 448 50.0
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.3e-90 337.8 447 48.5
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.3e-90 337.0 452 51.5
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 5.1e-90 335.9 290 66.2
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 5.1e-90 335.9 490 48.4
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 2.5e-89 333.6 472 49.6
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 4.3e-89 332.8 452 50.4
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 6.2e-88 328.9 387 53.0
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 1.8e-87 327.4 474 47.5
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 3.1e-87 326.6 472 47.9
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 3.1e-87 326.6 460 48.7
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 9.0e-87 325.1 468 50.4
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.5e-86 322.8 443 50.6
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.0e-85 321.6 440 49.8
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 2.2e-85 320.5 443 50.1
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 3.8e-85 319.7 484 46.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 6.5e-85 318.9 453 49.4
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 6.5e-85 318.9 446 48.4
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 1.4e-84 317.8 427 52.0
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.3e-84 315.1 502 44.8
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.9e-83 312.0 440 48.4
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 1.3e-82 311.2 448 45.3
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.3e-82 311.2 464 46.6
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.8e-82 310.8 347 53.6
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 4.3e-81 306.2 310 59.0
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 4.3e-81 306.2 465 48.0
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 3.7e-80 303.1 444 50.0
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 6.3e-80 302.4 352 53.1
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 5.3e-79 299.3 378 49.7
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.5e-78 296.2 317 56.2
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.9e-77 293.5 336 54.5
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 5.0e-77 292.7 436 46.3
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 1.1e-76 291.6 331 53.2
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 1.9e-76 290.8 400 48.2
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 3.6e-75 286.6 399 47.9
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 6.1e-75 285.8 467 40.9
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 8.8e-74 282.0 265 60.0
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 5.7e-73 279.3 453 44.8
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 5.7e-73 279.3 208 73.1
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.8e-72 276.9 466 44.0
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 3.7e-72 276.6 609 35.5
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 6.9e-71 272.3 364 51.1
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.2e-70 271.6 274 56.9
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 7.7e-70 268.9 295 54.2
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 2.9e-69 266.9 190 72.1
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 3.8e-69 266.5 299 52.8
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 5.0e-69 266.2 355 49.6
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 3.6e-67 260.0 302 54.3
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 3.0e-66 256.9 440 40.5
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.5e-65 254.6 220 63.2
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 4.4e-65 253.1 302 51.0
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 7.4e-65 252.3 234 60.7
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.7e-64 251.1 301 51.8
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 2.8e-64 250.4 297 52.5
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.8e-63 247.7 347 47.8
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.8e-63 247.7 313 55.0
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 1.5e-62 244.6 303 53.1
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 3.4e-62 243.4 439 44.0
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 3.4e-62 243.4 439 44.0
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 3.4e-62 243.4 240 58.8
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 7.7e-62 242.3 262 55.3
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 9.4e-60 235.3 249 54.6
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 4.7e-59 233.0 311 48.9
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 1.8e-58 231.1 455 42.2
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.1e-55 221.9 329 46.5
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.6e-54 217.2 314 46.2
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 4.7e-51 206.5 321 45.2
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 1.1e-47 195.3 271 48.3
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 3.5e-46 190.3 404 38.4
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.2e-45 187.6 190 56.8
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 1.1e-44 185.3 201 53.7
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 1.5e-44 184.9 189 54.0
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 2.0e-41 174.5 358 36.0
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 9.1e-39 165.6 478 34.9
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 2.7e-38 164.1 146 64.4
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.7e-37 161.4 313 37.1
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 3.8e-37 160.2 447 33.6
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 2.5e-36 157.5 216 49.1
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.0e-34 152.1 136 66.2
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 9.8e-33 145.6 111 68.5
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 2.0e-30 137.9 158 52.5
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 5.9e-30 136.3 257 38.5
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.3e-29 134.4 182 45.6
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.3e-29 134.4 214 42.5
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 9.5e-28 129.0 138 54.3
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.0e-26 125.6 71 80.3
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.0e-26 123.6 71 78.9
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 4.0e-26 123.6 159 45.9
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-25 121.3 69 78.3
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.5e-25 119.4 115 56.5
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-24 118.6 70 80.0
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.2e-24 117.9 95 61.1
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 5.4e-23 113.2 91 61.5
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 2.3e-21 107.8 193 34.7
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.0e-21 106.7 247 37.2
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 5.0e-21 106.7 264 37.1
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.6e-21 106.3 247 37.2
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.6e-21 106.3 247 37.2
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.9e-20 104.8 276 36.2
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 4.3e-20 103.6 262 35.5
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.1e-19 101.3 88 55.7
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 6.8e-18 96.3 158 43.7
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.8e-18 96.3 249 36.1
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.4e-15 88.6 141 44.0
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 2.4e-15 87.8 82 59.8
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 6.0e-14 83.2 110 50.0
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 2.8e-11 74.3 99 36.4
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 8.1e-11 72.8 166 33.1
Nn1g05398 Nelumbo nucifera HOM05D067915 ORTHO05D049297 7.5e-09 66.2 156 37.2
Nn1g05392 Nelumbo nucifera HOM05D067915 ORTHO05D049297 7.1e-07 59.7 150 32.7
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.1e-06 58.2 97 41.2
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.5e-06 57.4 80 46.2
CSS0039806 Camellia sinensis var. sinensis HOM05D043465 ORTHO05D033917 6.0e-06 56.6 147 33.3
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 7.8e-06 56.2 82 46.3


User provided reference genes

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