Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 9.7e-141 503.4 250 100.0
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 1.8e-131 472.6 251 96.4
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 1.1e-112 410.2 250 85.2
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.1e-80 303.9 248 67.7
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 2.4e-75 286.2 254 66.1
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.8e-49 200.3 259 49.8
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.9e-48 196.8 258 50.8
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 9.1e-46 188.0 276 47.1
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 3.4e-45 186.0 260 45.8
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.2e-44 183.3 255 46.7
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 8.5e-44 181.4 253 48.2
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 9.4e-43 177.9 259 46.7
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.2e-42 177.6 268 45.1
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.1e-42 176.8 267 48.7
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.7e-42 176.4 259 44.4
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 6.1e-42 175.3 260 46.9
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.3e-41 173.3 277 45.1
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 3.3e-40 169.5 262 46.9
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 4.4e-40 169.1 255 43.5
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.7e-40 168.7 255 43.5
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.7e-40 168.7 260 47.7
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.2e-39 166.8 255 43.5
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.8e-39 166.4 250 44.4
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 3.7e-39 166.0 256 44.9
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 3.7e-39 166.0 254 42.9
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.8e-39 165.6 253 45.5
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.8e-39 165.6 252 44.0
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 8.2e-39 164.9 258 43.8
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.1e-38 164.5 255 43.5
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.1e-38 164.5 272 43.8
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 2.4e-38 163.3 259 42.9
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.1e-38 162.9 253 42.7
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 5.3e-38 162.2 259 42.1
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 5.3e-38 162.2 257 47.5
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 9.1e-38 161.4 253 43.1
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 2.0e-37 160.2 233 47.6
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 2.6e-37 159.8 255 41.6
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 3.4e-37 159.5 260 45.4
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 3.4e-37 159.5 264 42.4
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.3e-36 157.5 258 42.2
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.7e-36 157.1 258 42.6
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.7e-36 157.1 259 41.7
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 6.5e-36 155.2 262 41.2
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 8.5e-36 154.8 256 43.4
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 2.5e-35 153.3 253 41.9
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.5e-35 152.1 253 43.5
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 9.4e-35 151.4 257 41.2
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-34 151.0 256 41.0
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.2e-34 151.0 256 41.8
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.7e-34 149.8 257 42.4
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.7e-34 149.1 256 41.4
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 7.9e-34 148.3 259 40.2
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.8e-33 147.1 253 40.7
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.9e-33 146.0 252 41.3
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 5.2e-33 145.6 259 43.2
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 6.7e-33 145.2 256 41.8
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.1e-32 144.4 259 40.5
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.1e-32 144.4 256 41.4
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.5e-32 144.1 263 39.5
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 3.3e-32 142.9 257 40.9
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 3.3e-32 142.9 253 40.7
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 5.7e-32 142.1 268 42.2
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 5.7e-32 142.1 256 40.2
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.3e-31 141.0 253 38.7
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 2.2e-31 140.2 272 40.8
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 2.2e-31 140.2 233 43.8
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 2.8e-31 139.8 257 38.9
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 6.3e-31 138.7 254 38.6
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 8.2e-31 138.3 273 39.6
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 8.2e-31 138.3 258 38.8
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 1.1e-30 137.9 270 41.9
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.1e-30 137.9 253 41.5
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.4e-30 137.5 256 37.9
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 7.0e-30 135.2 261 41.0
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 7.0e-30 135.2 254 38.2
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 9.1e-30 134.8 252 38.9
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.2e-29 134.4 254 37.8
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.2e-29 134.4 251 37.8
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.6e-29 134.0 254 38.2
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 3.5e-29 132.9 257 41.6
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 5.9e-29 132.1 204 48.0
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 5.9e-29 132.1 257 41.6
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 7.7e-29 131.7 265 40.0
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.1e-27 127.9 259 40.2
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 2.5e-27 126.7 263 37.3
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.2e-27 126.3 262 38.2
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 5.5e-27 125.6 256 38.3
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 7.2e-27 125.2 250 37.6
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 9.4e-27 124.8 256 38.3
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.6e-26 124.0 254 37.8
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.6e-26 124.0 264 37.5
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 2.7e-26 123.2 258 37.2
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 8.0e-26 121.7 255 37.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 8.0e-26 121.7 248 37.5
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 1.0e-25 121.3 263 36.5
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 7.5e-24 115.2 255 35.7
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 1.3e-23 114.4 207 38.6
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 3.7e-23 112.8 233 37.8
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 3.7e-23 112.8 257 34.6
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 2.4e-22 110.2 263 33.8
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 3.5e-21 106.3 272 36.0
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 5.9e-21 105.5 258 34.9
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 5.9e-21 105.5 250 34.8
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.0e-20 104.8 248 33.1
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.3e-20 104.4 250 34.4
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 3.8e-20 102.8 254 35.4
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.1e-19 101.3 257 32.7
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 5.5e-19 99.0 261 34.5
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 1.8e-17 94.0 253 33.6
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.3e-17 93.6 256 32.0
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 5.2e-17 92.4 251 31.9
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 5.2e-17 92.4 253 32.8
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 8.8e-17 91.7 278 29.5
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 2.6e-16 90.1 255 30.6
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 2.6e-16 90.1 255 30.6
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 2.6e-16 90.1 255 30.6
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.4e-16 89.7 278 29.5
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 5.7e-16 89.0 270 30.4
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 4.8e-15 85.9 255 32.9
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 3.1e-14 83.2 265 31.3
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 7.0e-14 82.0 255 32.5
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 9.1e-14 81.6 266 28.9
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 9.1e-14 81.6 128 44.5
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.2e-13 81.3 275 29.5
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 1.2e-13 81.3 257 31.9
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.6e-13 80.9 283 28.3
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.6e-13 80.9 248 33.5
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.6e-13 80.9 248 33.5
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 3.5e-13 79.7 282 27.0
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 2.9e-12 76.6 264 30.3
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 7.2e-11 72.0 95 46.3
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 7.2e-11 72.0 249 29.7
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 4.7e-10 69.3 109 41.3
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 1.0e-09 68.2 108 38.0
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.8e-09 67.4 109 42.2
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 3.0e-09 66.6 257 32.3
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 4.0e-09 66.2 95 43.2
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-08 64.7 104 40.4
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 2.2e-07 60.5 95 41.1


User provided reference genes

Program Settings