Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 1.4e-134 483.0 261 100.0
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.1e-118 430.3 261 91.2
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 7.6e-104 380.9 262 81.3
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 6.2e-98 361.3 261 80.5
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 2.9e-79 299.3 260 65.8
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 8.5e-79 297.7 260 66.5
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 8.5e-79 297.7 260 66.5
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.5e-78 296.2 260 65.8
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.5e-78 296.2 260 66.2
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 9.4e-78 294.3 264 65.2
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.2e-77 293.9 260 65.4
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.6e-77 293.5 260 65.4
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.6e-77 292.4 260 63.8
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 6.1e-77 291.6 264 65.9
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 7.9e-77 291.2 264 65.9
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.8e-76 290.0 261 66.3
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 1.8e-76 290.0 264 65.9
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 1.5e-75 287.0 261 65.9
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.2e-74 283.1 261 64.0
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 1.1e-73 280.8 260 62.7
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.4e-73 280.4 260 63.5
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 2.0e-72 276.6 259 64.1
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 4.5e-72 275.4 260 63.1
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.0e-71 274.2 264 61.7
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.0e-71 274.2 264 61.0
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 1.7e-71 273.5 260 64.2
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 5.0e-71 271.9 260 60.8
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 4.2e-70 268.9 261 62.8
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 1.2e-69 267.3 248 63.3
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 6.1e-69 265.0 260 62.3
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.0e-67 260.0 261 58.6
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 9.7e-67 257.7 264 60.2
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 2.8e-66 256.1 356 46.9
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 3.7e-66 255.8 262 58.8
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 3.7e-66 255.8 262 63.7
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 4.8e-66 255.4 269 58.4
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 6.3e-66 255.0 259 58.7
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 1.8e-65 253.4 247 61.1
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 3.1e-65 252.7 264 58.3
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 5.3e-65 251.9 262 56.9
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 9.1e-65 251.1 263 59.3
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.2e-64 250.8 260 58.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.0e-64 250.0 265 60.0
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.6e-64 249.6 260 61.5
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 7.7e-64 248.1 259 60.6
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 7.7e-64 248.1 276 55.8
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.0e-63 247.7 260 56.5
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.3e-63 247.3 260 60.8
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.7e-63 246.9 256 57.8
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 5.0e-63 245.4 256 54.3
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 8.5e-63 244.6 262 56.5
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 1.1e-62 244.2 260 54.2
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.1e-62 244.2 260 54.2
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.2e-62 242.7 263 57.4
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 4.2e-62 242.3 261 54.8
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 5.5e-62 241.9 260 62.3
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 9.4e-62 241.1 267 53.9
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 4.7e-61 238.8 266 58.3
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.4e-60 237.3 262 55.0
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 2.3e-60 236.5 261 55.9
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.0e-60 236.1 265 51.3
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 4.0e-60 235.7 261 60.2
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 4.0e-60 235.7 261 60.2
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 4.0e-60 235.7 266 56.0
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 5.2e-60 235.3 260 56.5
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 8.8e-60 234.6 260 58.5
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 8.8e-60 234.6 261 55.9
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 2.0e-59 233.4 261 55.2
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 2.6e-59 233.0 261 55.6
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.4e-59 232.3 260 55.8
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.4e-59 232.3 260 55.8
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 4.8e-58 228.8 258 55.8
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 8.2e-58 228.0 266 52.6
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.1e-57 227.6 261 57.1
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 1.4e-57 227.3 260 55.8
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.8e-57 226.9 282 51.1
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 3.1e-57 226.1 261 55.9
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 4.1e-57 225.7 261 57.9
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 4.1e-57 225.7 260 57.3
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 4.1e-57 225.7 257 53.7
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 5.3e-57 225.3 258 53.5
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 7.0e-57 224.9 265 56.2
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 9.1e-57 224.6 260 55.4
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.0e-56 223.4 264 54.2
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 2.0e-56 223.4 263 55.9
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 2.7e-56 223.0 258 54.3
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.5e-56 222.6 260 54.6
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.3e-55 220.7 271 50.9
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.9e-55 219.5 243 58.4
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 6.5e-55 218.4 207 63.3
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.1e-54 217.6 242 59.1
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.5e-54 217.2 264 55.3
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 2.5e-54 216.5 261 54.0
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 2.5e-54 216.5 261 53.3
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 7.2e-54 214.9 261 56.3
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 7.2e-54 214.9 265 53.6
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 4.7e-53 212.2 256 52.3
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 6.8e-52 208.4 263 49.0
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 2.0e-51 206.8 241 54.8
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 3.4e-51 206.1 261 51.7
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.2e-50 203.4 262 51.1
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 6.3e-50 201.8 267 49.1
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.0e-47 194.5 263 47.9
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.9e-46 190.3 242 51.7
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.2e-45 187.6 263 49.8
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.1e-45 186.8 270 50.7
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 2.7e-45 186.4 261 49.0
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 8.0e-45 184.9 272 47.4
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 8.0e-45 184.9 224 56.7
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.4e-44 184.1 266 47.4
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 4.4e-43 179.1 259 49.0
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 4.4e-43 179.1 258 48.1
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 9.8e-43 177.9 258 49.6
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 9.8e-43 177.9 256 49.2
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 9.8e-43 177.9 256 49.2
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 1.7e-42 177.2 293 43.3
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 6.3e-42 175.3 265 46.4
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.5e-38 163.3 267 41.6
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 3.3e-38 162.9 170 62.9
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 3.6e-37 159.5 182 56.6
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 4.0e-36 156.0 156 62.8
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 7.5e-35 151.8 250 42.4
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 4.9e-34 149.1 248 44.8
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 8.3e-34 148.3 263 43.3
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.4e-33 146.7 292 37.7
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 3.2e-33 146.4 239 42.3
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.1e-33 146.0 261 43.7
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.6e-32 144.1 263 41.8
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.9e-30 137.1 286 39.5
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 3.1e-28 129.8 296 34.8
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.1e-25 121.3 273 37.4
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 2.7e-24 116.7 94 70.2
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.8e-20 104.0 272 34.2
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 1.5e-19 100.9 191 41.9
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.5e-14 84.3 177 38.4
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 3.8e-10 69.7 58 63.8
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 2.4e-09 67.0 95 50.5
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 4.1e-09 66.2 135 39.3
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.5e-06 57.8 125 30.4
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.5e-06 57.0 60 53.3


User provided reference genes

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