Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 3.5e-89 331.6 172 100.0
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.0e-68 262.7 174 78.7
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 3.3e-63 245.4 150 88.0
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 1.2e-44 183.7 183 57.9
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 5.5e-18 95.1 182 39.6
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 1.6e-17 93.6 189 38.6
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.8e-16 90.1 179 36.9
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 6.7e-16 88.2 157 45.2
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 1.5e-15 87.0 80 60.0
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 2.0e-15 86.7 183 36.1
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.0e-15 86.7 83 61.4
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 3.3e-15 85.9 152 40.1
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 3.3e-15 85.9 190 36.8
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 4.4e-15 85.5 178 38.2
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 7.4e-15 84.7 182 38.5
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 7.4e-15 84.7 83 56.6
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.3e-14 84.0 152 39.5
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 1.3e-14 84.0 123 48.8
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.2e-14 83.2 198 35.4
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.8e-14 82.8 152 39.5
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 3.7e-14 82.4 184 40.2
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 3.7e-14 82.4 178 34.8
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 4.8e-14 82.0 60 70.0
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 8.2e-14 81.3 105 49.5
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.8e-13 80.1 60 65.0
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.8e-13 80.1 60 65.0
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 2.4e-13 79.7 64 68.8
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 4.1e-13 79.0 65 60.0
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 6.9e-13 78.2 186 39.8
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.5e-12 77.0 149 38.9
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.0e-12 76.6 73 58.9
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 2.0e-12 76.6 83 54.2
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 5.9e-12 75.1 77 54.5
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 5.9e-12 75.1 109 47.7
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.0e-11 74.3 82 48.8
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 1.0e-11 74.3 172 34.9
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 1.3e-11 73.9 61 67.2
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 1.3e-11 73.9 73 60.3
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.7e-11 73.6 78 57.7
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.2e-11 73.2 61 63.9
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 3.8e-11 72.4 63 58.7
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 3.8e-11 72.4 64 64.1
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 5.0e-11 72.0 77 54.5
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 5.0e-11 72.0 123 41.5
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 5.0e-11 72.0 171 33.3
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 5.0e-11 72.0 117 42.7
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 5.0e-11 72.0 175 33.1
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 6.5e-11 71.6 75 54.7
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 6.5e-11 71.6 63 58.7
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 6.5e-11 71.6 75 53.3
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 6.5e-11 71.6 63 58.7
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 6.5e-11 71.6 66 59.1
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 6.5e-11 71.6 63 58.7
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 6.5e-11 71.6 63 58.7
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 6.5e-11 71.6 75 53.3
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 8.5e-11 71.2 65 56.9
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 8.5e-11 71.2 80 50.0
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 8.5e-11 71.2 61 63.9
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 1.9e-10 70.1 129 41.1
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 2.5e-10 69.7 123 40.7
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 2.5e-10 69.7 61 59.0
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 2.5e-10 69.7 61 60.7
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 2.5e-10 69.7 71 52.1
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 2.5e-10 69.7 60 58.3
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 3.2e-10 69.3 75 53.3
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 3.2e-10 69.3 75 53.3
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 3.2e-10 69.3 75 53.3
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 3.2e-10 69.3 79 49.4
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 3.2e-10 69.3 171 29.2
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 4.2e-10 68.9 64 56.2
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 4.2e-10 68.9 64 56.2
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 4.2e-10 68.9 178 32.0
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 5.5e-10 68.6 64 56.2
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 5.5e-10 68.6 75 53.3
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 7.2e-10 68.2 121 41.3
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 1.6e-09 67.0 120 36.7
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 2.1e-09 66.6 66 53.0
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 2.7e-09 66.2 176 33.0
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 6.1e-09 65.1 81 48.1
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 6.1e-09 65.1 79 51.9
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 8.0e-09 64.7 63 55.6
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 8.0e-09 64.7 63 55.6
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 1.4e-08 63.9 60 61.7
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 1.8e-08 63.5 65 52.3
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 3.0e-08 62.8 59 61.0
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 3.9e-08 62.4 84 52.4
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 3.9e-08 62.4 69 50.7
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 6.7e-08 61.6 103 40.8
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 6.7e-08 61.6 79 50.6
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 2.6e-07 59.7 78 46.2
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 3.3e-07 59.3 60 55.0
ClCG06G013380 Citrullus lanatus HOM05D015664 ORTHO05D008524 4.4e-07 58.9 92 43.5
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 4.4e-07 58.9 60 55.0
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 7.4e-07 58.2 89 39.3
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 7.4e-07 58.2 72 45.8
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 9.7e-07 57.8 78 46.2
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 1.3e-06 57.4 76 47.4
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.3e-06 57.4 95 37.9
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 1.7e-06 57.0 65 50.8
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.2e-06 56.6 99 39.4
CsaV3_1G031630 Cucumis sativus L. HOM05D015664 ORTHO05D008524 2.2e-06 56.6 124 35.5
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 2.2e-06 56.6 61 52.5
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 2.2e-06 56.6 74 43.2
Cpa.g.sc233.5 Carica papaya HOM05D018436 ORTHO05D008524 2.8e-06 56.2 103 39.8
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 2.8e-06 56.2 52 53.8
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 3.7e-06 55.8 83 41.0
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 3.7e-06 55.8 83 39.8
FAN03G3432 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.8e-06 55.5 69 43.5
MELO3C017459.2 Cucumis melo HOM05D015664 ORTHO05D008524 6.3e-06 55.1 93 39.8
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 6.3e-06 55.1 48 56.2
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 6.3e-06 55.1 48 56.2
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 6.3e-06 55.1 52 51.9
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 6.3e-06 55.1 72 38.9
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 6.3e-06 55.1 77 41.6
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 6.3e-06 55.1 48 54.2
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 8.2e-06 54.7 142 34.5
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 8.2e-06 54.7 75 46.7
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 8.2e-06 54.7 87 40.2
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 8.2e-06 54.7 69 42.0


User provided reference genes

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