Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.7e-45 185.7 93 100.0
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 1.1e-25 119.8 88 68.2
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 1.9e-25 119.0 88 68.2
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.5e-25 118.6 107 57.9
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 2.5e-25 118.6 87 66.7
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 7.3e-25 117.1 93 61.3
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.6e-22 108.6 88 62.5
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.4e-22 107.8 90 63.3
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 5.8e-22 107.5 91 60.4
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 4.1e-20 101.3 99 52.5
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 3.0e-18 95.1 49 95.9
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 6.6e-18 94.0 80 58.8
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 6.6e-18 94.0 49 93.9
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 7.3e-17 90.5 89 55.1
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 7.3e-17 90.5 53 79.2
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.2e-16 89.7 51 86.3
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 2.8e-16 88.6 89 53.9
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.8e-16 88.6 90 56.7
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 3.6e-16 88.2 89 53.9
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 4.7e-16 87.8 89 55.1
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.2e-16 87.4 55 74.5
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.1e-15 85.1 54 74.1
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 6.8e-15 84.0 91 49.5
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.2e-14 83.2 59 71.2
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.3e-13 79.7 58 69.0
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.3e-13 79.7 49 77.6
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 2.2e-13 79.0 50 76.0
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.9e-13 78.6 74 59.5
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 2.4e-12 75.5 48 75.0
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 2.4e-12 75.5 51 72.5
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.2e-12 75.1 51 72.5
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 5.4e-12 74.3 48 72.9
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 5.4e-12 74.3 48 75.0
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 7.1e-12 73.9 54 63.0
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 7.1e-12 73.9 53 67.9
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 9.3e-12 73.6 57 64.9
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 9.3e-12 73.6 49 71.4
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.2e-11 73.2 49 71.4
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 2.1e-11 72.4 88 43.2
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.1e-11 72.4 47 72.3
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.1e-11 72.4 49 69.4
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.1e-11 72.4 49 69.4
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 2.1e-11 72.4 49 69.4
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 2.7e-11 72.0 48 72.9
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 3.5e-11 71.6 48 72.9
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 4.6e-11 71.2 48 70.8
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 4.6e-11 71.2 48 70.8
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.6e-11 71.2 53 67.9
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 4.6e-11 71.2 49 67.3
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 4.6e-11 71.2 51 66.7
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 4.6e-11 71.2 48 72.9
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 4.6e-11 71.2 48 70.8
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 6.0e-11 70.9 49 67.3
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 6.0e-11 70.9 47 74.5
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 1.0e-10 70.1 47 70.2
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.0e-10 70.1 47 72.3
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 1.0e-10 70.1 49 69.4
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.3e-10 69.7 48 70.8
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 1.3e-10 69.7 51 66.7
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.3e-10 69.7 51 66.7
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 2.3e-10 68.9 52 67.3
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.0e-10 68.6 51 64.7
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 3.9e-10 68.2 48 62.5
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 3.9e-10 68.2 48 70.8
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 3.9e-10 68.2 47 68.1
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 3.9e-10 68.2 48 66.7
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 3.9e-10 68.2 93 38.7
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 5.1e-10 67.8 49 63.3
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 5.1e-10 67.8 52 63.5
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 5.1e-10 67.8 46 73.9
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 1.5e-09 66.2 89 40.4
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.5e-09 65.5 52 63.5
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.3e-09 65.1 53 58.5
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 3.3e-09 65.1 52 61.5
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 3.3e-09 65.1 52 61.5
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 3.3e-09 65.1 52 61.5
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 4.3e-09 64.7 51 62.7
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 4.3e-09 64.7 47 63.8
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 4.3e-09 64.7 47 63.8
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.6e-09 64.3 47 63.8
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 5.6e-09 64.3 51 62.7
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 7.3e-09 63.9 49 65.3
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 9.6e-09 63.5 91 37.4
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 9.6e-09 63.5 48 66.7
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 9.6e-09 63.5 45 71.1
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.3e-08 63.2 45 57.8
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.6e-08 62.8 48 58.3
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.6e-08 62.8 48 62.5
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 2.1e-08 62.4 50 62.0
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 2.1e-08 62.4 51 64.7
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.1e-08 62.4 47 61.7
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 2.8e-08 62.0 51 58.8
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 4.8e-08 61.2 49 61.2
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 6.2e-08 60.8 39 66.7
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 6.2e-08 60.8 47 59.6
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 1.8e-07 59.3 53 56.6
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.8e-07 59.3 49 59.2
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 3.1e-07 58.5 47 55.3
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 4.0e-07 58.2 48 62.5
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 4.0e-07 58.2 65 43.1
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 5.3e-07 57.8 50 52.0
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 6.9e-07 57.4 49 59.2
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.5e-06 56.2 49 57.1
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.6e-06 55.5 47 57.4
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 2.6e-06 55.5 49 51.0
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 3.4e-06 55.1 47 55.3
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 5.8e-06 54.3 42 61.9


User provided reference genes

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