Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G030450 Cucumis sativus L. HOM05D000194 ORTHO05D000069 8.7e-42 173.3 94 100.0
ClCG05G026510 Citrullus lanatus HOM05D000194 ORTHO05D000069 1.3e-29 132.9 94 80.9
Sed0006513 Sechium edule HOM05D000194 ORTHO05D000069 1.8e-23 112.5 94 71.3
MELO3C016841.2 Cucumis melo HOM05D000194 ORTHO05D000069 6.9e-23 110.5 94 70.2
CsaV3_4G035310 Cucumis sativus L. HOM05D000194 ORTHO05D000069 1.2e-22 109.8 94 70.2
Actinidia10226 Actinidia chinensis HOM05D000194 ORTHO05D000069 2.5e-12 75.5 95 52.6
Cpa.g.sc160.32 Carica papaya HOM05D000194 ORTHO05D000069 7.2e-12 73.9 97 51.5
Thecc.08G083800 Theobroma cacao HOM05D000194 ORTHO05D000069 7.2e-12 73.9 74 62.2
Nn5g30674 Nelumbo nucifera HOM05D000194 ORTHO05D000069 9.4e-12 73.6 65 64.6
TWI56G1122 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 1.2e-11 73.2 97 50.5
Dinv39203 Davidia involucrata HOM05D000194 ORTHO05D000069 2.1e-11 72.4 97 50.5
Manes.18G050100 Manihot esculenta HOM05D000194 ORTHO05D000069 6.1e-11 70.9 97 50.5
PGR031G0517 Punica granatum HOM05D000194 ORTHO05D000069 6.1e-11 70.9 90 55.6
MD08G1077000 Malus domestica HOM05D000194 ORTHO05D000069 1.0e-10 70.1 97 50.5
RcHm_v2.0_Chr6g0310101 Rosa chinensis HOM05D000194 ORTHO05D000069 1.4e-10 69.7 79 54.4
Gohir.D06G023700 Gossypium hirsutum HOM05D000194 ORTHO05D000069 1.8e-10 69.3 79 55.7
Gorai.010G028200 Gossypium raimondii HOM05D000194 ORTHO05D000069 1.8e-10 69.3 79 55.7
Sabra05G0116900 Salix brachista HOM05D000194 ORTHO05D000069 1.8e-10 69.3 97 49.5
FAN20G2303 Fragaria x ananassa HOM05D000194 ORTHO05D000069 2.3e-10 68.9 79 54.4
MD15G1064500 Malus domestica HOM05D000194 ORTHO05D000069 3.0e-10 68.6 90 52.2
Actinidia19291 Actinidia chinensis HOM05D000194 ORTHO05D000069 3.9e-10 68.2 95 51.6
CSS0031287 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 3.9e-10 68.2 97 47.4
FvH4_2g32580 Fragaria vesca HOM05D000194 ORTHO05D000069 5.1e-10 67.8 79 53.2
Haze_22377 Corylus avellana HOM05D000194 ORTHO05D000069 6.7e-10 67.4 91 50.5
Ciclev10001249m.g Citrus clementina HOM05D000194 ORTHO05D000069 8.8e-10 67.0 76 57.9
Gohir.A06G026400 Gossypium hirsutum HOM05D000194 ORTHO05D000069 8.8e-10 67.0 79 54.4
Nn6g34531 Nelumbo nucifera HOM05D000194 ORTHO05D000069 8.8e-10 67.0 60 65.0
Potri.005G146500 Populus trichocarpa HOM05D000194 ORTHO05D000069 8.8e-10 67.0 90 51.1
Duzib093G1145 Durio zibethinus HOM05D000194 ORTHO05D000069 1.1e-09 66.6 67 59.7
FAN24G3130 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.1e-09 66.6 79 53.2
FAN27G2857 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.1e-09 66.6 79 51.9
Glyma.14G089600 Glycine max HOM05D000194 ORTHO05D000069 1.1e-09 66.6 89 50.6
COL.COLO4_28454 Corchorus olitorius HOM05D000194 ORTHO05D000069 1.5e-09 66.2 74 56.8
FAN15G0744 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.5e-09 66.2 79 53.2
Sabra02G0090700 Salix brachista HOM05D000194 ORTHO05D000069 1.5e-09 66.2 97 48.5
GSVIVG01009292001 Vitis vinifera HOM05D000194 ORTHO05D000069 1.5e-09 66.2 97 45.4
Eucgr.F00100 Eucalyptus grandis HOM05D000194 ORTHO05D000069 2.0e-09 65.9 80 53.8
CANSAT25G0613 Cannabis sativa HOM05D000194 ORTHO05D000069 2.5e-09 65.5 93 50.5
Glyma.17G232285 Glycine max HOM05D000194 ORTHO05D000069 2.5e-09 65.5 90 51.1
Lj4A76T63 Lonicera japonica HOM05D000194 ORTHO05D000069 3.3e-09 65.1 54 66.7
TAR625G1060 Trochodendron aralioides HOM05D000194 ORTHO05D000069 3.3e-09 65.1 90 53.3
CiPaw.08G052800 Carya illinoinensis HOM05D000194 ORTHO05D000069 4.3e-09 64.7 79 55.7
Duzib116G0948 Durio zibethinus HOM05D000194 ORTHO05D000069 4.3e-09 64.7 65 58.5
Phvul.001G031300 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 5.7e-09 64.3 89 48.3
Potri.002G114700 Populus trichocarpa HOM05D000194 ORTHO05D000069 5.7e-09 64.3 90 48.9
VMungo0647G2249 Vigna mungo HOM05D000194 ORTHO05D000069 5.7e-09 64.3 89 48.3
arahy.Tifrunner.gnm1.ann1.TWQ0V4 Arachis hypogaea HOM05D000194 ORTHO05D000069 7.4e-09 63.9 89 52.8
arahy.Tifrunner.gnm1.ann1.W9Z2JH Arachis hypogaea HOM05D000194 ORTHO05D000069 7.4e-09 63.9 89 52.8
Duzib041G0407 Durio zibethinus HOM05D000194 ORTHO05D000069 9.7e-09 63.5 67 58.2
Aqoxy6G02441 Aquilegia oxysepala HOM05D000194 ORTHO05D000069 1.7e-08 62.8 74 56.8
DCAR_020069 Daucus carota HOM05D000194 ORTHO05D000069 1.7e-08 62.8 91 47.3
ECA246G3756 Erigeron canadensis HOM05D000194 ORTHO05D000069 2.2e-08 62.4 80 55.0
Eucgr.F02220 Eucalyptus grandis HOM05D000194 ORTHO05D000069 2.2e-08 62.4 82 48.8
HanXRQChr08g0226621 Helianthus annuus HOM05D000194 ORTHO05D000069 2.2e-08 62.4 71 54.9
TWI12G0712 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 2.2e-08 62.4 97 46.4
vmacro21411 Vaccinium macrocarpon HOM05D000194 ORTHO05D000069 2.2e-08 62.4 94 47.9
arahy.Tifrunner.gnm1.ann1.U34X7W Arachis hypogaea HOM05D000194 ORTHO05D000069 2.8e-08 62.0 77 49.4
Prupe.1G418500 Prunus persica HOM05D000194 ORTHO05D000069 2.8e-08 62.0 74 56.8
THA.LOC104819959 Tarenaya hassleriana HOM05D000194 ORTHO05D000069 4.8e-08 61.2 61 57.4
Atru.chr13.877 Acer truncatum HOM05D000194 ORTHO05D000069 8.2e-08 60.5 78 53.8
CiPaw.07G171500 Carya illinoinensis HOM05D000194 ORTHO05D000069 8.2e-08 60.5 67 55.2
CSS0021114 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 1.1e-07 60.1 97 46.4
Sed0003292 Sechium edule HOM05D000194 ORTHO05D000069 1.1e-07 60.1 86 47.7
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.4e-07 59.7 60 60.0
Lalb_Chr24g0399521 Lupinus albus HOM05D000194 ORTHO05D000069 1.8e-07 59.3 72 54.2
Oeu022011.1 Olea europaea HOM05D000194 ORTHO05D000069 2.4e-07 58.9 58 58.6
Nitab4.5_0009818g0020 Nicotiana tabacum HOM05D000194 ORTHO05D000069 4.1e-07 58.2 67 52.2
Rhsim06G0065000 Rhododendron simsii HOM05D000194 ORTHO05D000069 4.1e-07 58.2 94 46.8
Lsat_1_v5_gn_1_681 Lactuca sativa HOM05D000194 ORTHO05D000069 5.3e-07 57.8 72 52.8
TAR381G0128 Trochodendron aralioides HOM05D000194 ORTHO05D000069 5.3e-07 57.8 81 49.4
Aa31LG1G4770 Aethionema arabicum HOM05D000194 ORTHO05D000069 6.9e-07 57.4 77 48.1
Ah.11g039130 Amaranthus hybridus HOM05D000194 ORTHO05D000069 6.9e-07 57.4 89 44.9
arahy.Tifrunner.gnm1.ann1.VV941S Arachis hypogaea HOM05D000194 ORTHO05D000069 6.9e-07 57.4 37 75.7
AUR62034991 Chenopodium quinoa HOM05D000194 ORTHO05D000069 6.9e-07 57.4 70 52.9
Cc10_g07700 Coffea canephora HOM05D000194 ORTHO05D000069 6.9e-07 57.4 97 42.3
Lalb_Chr22g0355841 Lupinus albus HOM05D000194 ORTHO05D000069 6.9e-07 57.4 91 48.4
Ah.05g166900 Amaranthus hybridus HOM05D000285 ORTHO05D000069 9.1e-07 57.0 59 54.2
Peaxi162Scf01161g00122 Petunia axillaris HOM05D000194 ORTHO05D000069 9.1e-07 57.0 88 43.2
MSTRG.25018 Avicennia marina HOM05D000194 ORTHO05D000069 1.2e-06 56.6 81 46.9
AUR62037403 Chenopodium quinoa HOM05D000194 ORTHO05D000069 1.2e-06 56.6 70 52.9
MBI16_g31134_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 1.2e-06 56.6 90 46.7
Oeu035889.1 Olea europaea HOM05D000194 ORTHO05D000069 1.2e-06 56.6 74 50.0
GSVIVG01007389001 Vitis vinifera HOM05D000194 ORTHO05D000069 1.2e-06 56.6 60 55.0
ATR0561G145 Amborella trichopoda HOM05D000194 ORTHO05D000069 1.5e-06 56.2 75 50.7
ATR0739G038 Amborella trichopoda HOM05D000194 ORTHO05D000069 1.5e-06 56.2 91 47.3
SalBow7G1715 Salvia bowleyana HOM05D000194 ORTHO05D000069 1.5e-06 56.2 90 44.4
THA.LOC104816767 Tarenaya hassleriana HOM05D000194 ORTHO05D000069 2.0e-06 55.8 72 51.4
Actinidia23778 Actinidia chinensis HOM05D000194 ORTHO05D000069 2.6e-06 55.5 52 53.8
Sc15g0005360 Simmondsia chinensis HOM05D000194 ORTHO05D000069 2.6e-06 55.5 78 47.4
PGSC0003DMG400004922 Solanum tuberosum HOM05D000194 ORTHO05D000069 2.6e-06 55.5 92 42.4
Aa31LG2G10680 Aethionema arabicum HOM05D000194 ORTHO05D000069 3.4e-06 55.1 46 60.9
Dinv26962 Davidia involucrata HOM05D000194 ORTHO05D000069 4.5e-06 54.7 59 54.2
Glyma.04G048000 Glycine max HOM05D000194 ORTHO05D000069 4.5e-06 54.7 91 49.5
Sp1g08750 Schrenkiella parvula HOM05D000194 ORTHO05D000069 4.5e-06 54.7 44 61.4
Lj5g0000208 Lotus japonicus HOM05D000194 ORTHO05D000069 5.9e-06 54.3 88 42.0
Solyc04g077480.3 Solanum lycopersicum HOM05D000194 ORTHO05D000069 5.9e-06 54.3 92 41.3
Sopen04g031080 Solanum pennellii HOM05D000194 ORTHO05D000069 5.9e-06 54.3 92 41.3
AT1G10120 Arabidopsis thaliana HOM05D000194 ORTHO05D000069 7.7e-06 53.9 49 63.3
CDE05G0833 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 7.7e-06 53.9 76 50.0
Lalb_Chr14g0368001 Lupinus albus HOM05D000194 ORTHO05D000069 7.7e-06 53.9 94 43.6


User provided reference genes

Program Settings