Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 2550.0 1318 100.0
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 2377.4 1343 93.1
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 2298.9 1346 88.9
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 2117.4 1348 82.3
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1829.7 1376 70.5
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1812.0 1371 69.8
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1803.5 1372 70.8
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1801.2 1371 70.5
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1793.9 1359 71.0
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1789.2 1350 70.7
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1774.6 1383 69.1
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1774.2 1360 69.2
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1756.9 1368 68.8
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1755.7 1368 68.8
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1752.3 1348 69.1
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1752.3 1370 68.3
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1746.9 1357 69.6
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1745.7 1353 69.9
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1741.1 1378 68.8
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1738.4 1351 68.8
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1736.1 1367 67.4
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1729.1 1406 66.8
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1726.1 1346 68.0
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1723.0 1363 68.1
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1721.8 1358 68.0
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1721.1 1366 68.2
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1718.7 1367 67.3
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1716.4 1369 66.8
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1713.4 1361 67.5
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1712.6 1350 67.4
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1711.4 1374 67.7
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1705.6 1350 67.1
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1703.7 1600 59.8
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1701.0 1350 67.0
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1700.6 1369 67.8
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1699.5 1352 67.0
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1680.2 1343 67.9
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1666.4 1382 64.6
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1664.4 1392 65.7
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1663.3 1375 64.7
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1659.0 1056 82.3
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1656.3 1355 67.2
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1652.5 1384 64.0
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1644.4 1366 65.0
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1643.2 1390 64.4
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1641.7 1357 66.0
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1634.4 1346 66.0
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1625.1 1349 64.7
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1624.4 1375 64.3
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1620.5 1427 63.4
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1617.4 1354 65.1
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1615.1 1371 65.4
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1613.6 1371 64.3
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1607.0 1372 63.9
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1606.3 1357 64.8
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1604.7 1371 64.6
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1600.5 1373 63.7
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1590.5 1365 63.0
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1590.1 1342 63.9
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1590.1 1353 63.8
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1588.9 1382 64.0
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1587.4 1337 64.0
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1585.9 1357 63.9
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1585.5 1352 63.3
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1583.2 1326 65.2
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1582.8 1361 62.8
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1580.1 1340 63.7
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1576.6 1353 63.0
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1575.5 1340 63.3
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1575.5 1342 64.5
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1572.0 1374 62.2
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1570.1 1359 62.2
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1568.1 1359 62.1
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1553.5 1357 62.5
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1551.6 1365 62.5
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1547.7 1351 62.3
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1544.3 1312 65.6
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1538.5 1349 62.1
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1528.8 1300 63.8
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1520.4 1363 61.3
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1497.6 1402 59.1
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1480.7 1350 59.6
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1480.3 1354 59.7
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1468.0 1353 59.1
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1460.3 1255 62.7
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1450.3 1419 57.4
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1448.7 1383 59.0
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1425.2 1355 57.7
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1423.3 1346 58.1
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1418.3 1252 61.5
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1417.5 1189 65.4
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1413.7 1348 58.2
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1399.4 1346 57.6
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1364.7 1376 56.2
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1357.0 1337 57.1
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1352.8 1067 69.5
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1347.4 1351 57.2
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1342.0 1011 70.4
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1338.2 1339 55.0
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1338.2 1339 55.0
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1335.1 1340 55.1
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1332.4 1117 65.0
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1324.7 1337 55.0
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1318.1 1336 54.9
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1316.6 1337 54.7
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1315.1 1340 54.9
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1276.9 722 94.7
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1235.3 936 70.8
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 0.0e+00 1204.5 1435 51.0
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1181.4 847 73.3
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1179.5 846 73.2
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1175.6 1017 65.8
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1164.1 1014 65.1
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 0.0e+00 1158.7 1373 51.3
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1152.1 831 72.3
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1120.1 1278 51.3
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1119.8 932 64.7
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 6.4e-300 1034.6 1385 45.0
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 6.0e-298 1028.1 1377 45.5
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 6.2e-295 1018.1 1384 45.7
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 3.0e-273 946.0 743 68.2
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 2.8e-271 939.5 633 76.0
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 8.4e-268 927.9 887 58.6
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 1.5e-245 854.0 615 69.8
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.1e-243 847.8 1061 48.9
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 5.7e-232 808.9 1092 46.7
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 7.5e-232 808.5 985 51.2
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.0e-225 788.1 561 77.0
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 3.7e-215 753.1 1535 35.4
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 1.5e-208 731.1 682 60.6
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 9.6e-179 632.1 419 78.3
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 1.4e-166 591.7 425 73.2
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 2.7e-165 587.4 419 73.7
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 3.1e-161 573.9 578 55.9
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 1.4e-142 511.9 363 71.1
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.7e-135 488.4 503 53.9
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.4e-105 389.0 258 76.4
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.4e-105 388.3 283 67.5
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 8.0e-101 373.2 276 66.3
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 1.1e-97 362.8 537 43.6
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.6e-96 359.0 408 54.2
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 3.5e-96 357.8 287 64.8
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 7.8e-96 356.7 223 84.3
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 2.9e-95 354.8 277 66.4
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 3.8e-95 354.4 299 61.2
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.8e-68 265.8 272 50.0
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 4.4e-67 261.2 252 56.7
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 8.4e-66 256.9 218 67.4
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.1e-65 256.5 277 54.2
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 4.2e-65 254.6 197 64.5
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.0e-63 248.4 393 41.5
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 3.1e-60 238.4 286 47.6
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 5.1e-47 194.5 129 69.8
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 9.3e-41 173.7 119 74.8
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 1.8e-39 169.5 136 69.1
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 8.7e-39 167.2 233 45.5
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 1.6e-37 162.9 217 47.9
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 4.8e-29 134.8 131 55.0
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 3.3e-22 112.1 131 49.6
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 9.7e-22 110.5 88 65.9
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.8e-20 106.3 84 60.7
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 4.5e-19 101.7 92 56.5
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 1.0e-18 100.5 73 68.5
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 2.9e-18 99.0 60 73.3
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 8.5e-18 97.4 133 46.6
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 1.1e-17 97.1 60 71.7
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 1.1e-17 97.1 60 71.7
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 5.5e-17 94.7 60 70.0
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 7.2e-17 94.4 58 70.7
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 2.8e-13 82.4 237 31.6
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 8.2e-13 80.9 65 58.5
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 6.5e-10 71.2 67 53.7
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.1e-08 66.2 107 41.1
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 3.6e-08 65.5 32 96.9
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 2.0e-06 59.7 48 58.3


User provided reference genes

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