Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 1.0e-69 266.5 131 100.0
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 1.6e-41 172.9 97 89.7
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 1.1e-34 150.2 94 80.9
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 1.2e-25 120.2 103 65.0
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 1.1e-23 113.6 150 46.0
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 9.6e-23 110.5 148 45.3
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 4.8e-22 108.2 155 45.2
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.4e-21 106.7 156 42.3
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.8e-21 106.3 148 45.9
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 2.4e-21 105.9 141 44.7
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 3.1e-21 105.5 147 42.9
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 3.1e-21 105.5 150 44.0
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 1.2e-20 103.6 117 53.8
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 1.5e-20 103.2 151 43.7
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.5e-20 103.2 150 42.7
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 2.0e-20 102.8 145 44.8
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 2.0e-20 102.8 145 44.8
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 3.4e-20 102.1 151 38.4
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 5.8e-20 101.3 145 44.8
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 7.6e-20 100.9 152 42.8
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 7.6e-20 100.9 163 41.1
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 1.3e-19 100.1 153 43.8
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.7e-19 99.8 154 43.5
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 1.7e-19 99.8 147 39.5
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 8.4e-19 97.4 149 42.3
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 8.4e-19 97.4 154 40.3
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 1.9e-18 96.3 146 45.2
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 7.1e-18 94.4 146 42.5
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 9.3e-18 94.0 155 38.7
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 1.6e-17 93.2 161 43.5
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 1.6e-17 93.2 151 39.1
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 2.1e-17 92.8 161 43.5
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 2.1e-17 92.8 158 43.0
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 3.5e-17 92.0 154 42.9
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 3.5e-17 92.0 161 43.5
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 3.5e-17 92.0 161 42.9
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 3.5e-17 92.0 161 42.9
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 3.5e-17 92.0 148 38.5
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 3.5e-17 92.0 151 38.4
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 3.5e-17 92.0 151 41.1
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 4.6e-17 91.7 162 38.9
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 4.6e-17 91.7 158 44.3
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 4.6e-17 91.7 157 42.7
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 4.6e-17 91.7 144 38.2
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 6.0e-17 91.3 155 40.6
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 7.9e-17 90.9 135 43.7
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 1.3e-16 90.1 147 36.1
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.3e-16 90.1 118 49.2
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 1.3e-16 90.1 159 41.5
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 1.3e-16 90.1 156 36.5
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 1.3e-16 90.1 152 40.1
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.8e-16 89.7 148 43.9
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 2.3e-16 89.4 152 40.1
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 3.9e-16 88.6 157 40.8
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 3.9e-16 88.6 143 42.0
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 5.1e-16 88.2 161 39.1
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 6.7e-16 87.8 148 43.2
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 8.7e-16 87.4 157 40.8
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 8.7e-16 87.4 154 40.9
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 1.1e-15 87.0 146 39.0
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.5e-15 86.7 118 49.2
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.9e-15 86.3 148 43.2
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 1.9e-15 86.3 155 36.8
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 3.3e-15 85.5 157 41.4
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 4.3e-15 85.1 93 54.8
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 9.6e-15 84.0 146 37.7
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 9.6e-15 84.0 161 38.5
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 1.3e-14 83.6 145 36.6
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 1.3e-14 83.6 147 36.7
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 1.6e-14 83.2 155 36.1
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 3.7e-14 82.0 101 46.5
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 3.7e-14 82.0 152 36.2
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 4.8e-14 81.6 154 37.7
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 8.2e-14 80.9 160 38.8
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 8.2e-14 80.9 142 38.0
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 1.4e-13 80.1 104 47.1
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.4e-13 80.1 152 37.5
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 1.8e-13 79.7 161 37.3
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.4e-13 79.3 108 44.4
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 2.4e-13 79.3 153 38.6
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 3.1e-13 79.0 153 39.9
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 5.3e-13 78.2 107 43.9
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 5.3e-13 78.2 115 42.6
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 1.2e-12 77.0 148 36.5
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 3.4e-12 75.5 103 42.7
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 3.4e-12 75.5 93 52.7
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 5.9e-12 74.7 94 51.1
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 7.6e-12 74.3 94 50.0
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 1.0e-11 73.9 94 50.0
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 1.3e-11 73.6 94 50.0
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 5.0e-11 71.6 149 38.9
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 6.5e-11 71.2 99 42.4
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 1.1e-10 70.5 151 38.4
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 1.4e-10 70.1 155 38.1
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 2.5e-10 69.3 107 45.8
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 7.2e-10 67.8 155 35.5
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 9.3e-10 67.4 113 43.4
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 1.2e-09 67.0 115 40.9
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 1.6e-09 66.6 95 45.3
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 2.1e-09 66.2 47 70.2
Gohir.D08G106900 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.1e-09 66.2 150 32.0
Gorai.004G114100 Gossypium raimondii HOM05D003638 ORTHO05D003202 2.1e-09 66.2 150 32.0
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 2.7e-09 65.9 100 45.0
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 3.5e-09 65.5 109 44.0
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 3.5e-09 65.5 155 33.5
unitig_748.g7180 Utricularia gibba HOM05D001212 ORTHO05D000246 3.5e-09 65.5 101 43.6
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 4.6e-09 65.1 100 46.0
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 7.9e-09 64.3 113 40.7
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 7.9e-09 64.3 104 44.2
Nn2g12242 Nelumbo nucifera HOM05D003638 ORTHO05D003202 1.3e-08 63.5 89 46.1
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 1.3e-08 63.5 115 40.0
Phvul.003G174500 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 1.8e-08 63.2 87 48.3
arahy.Tifrunner.gnm1.ann1.S7JRIG Arachis hypogaea HOM05D003638 ORTHO05D003202 2.3e-08 62.8 114 40.4
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 2.3e-08 62.8 160 34.4
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 2.3e-08 62.8 160 34.4
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 2.3e-08 62.8 138 37.0
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 2.3e-08 62.8 97 46.4
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 2.3e-08 62.8 141 30.5
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 3.0e-08 62.4 112 40.2
arahy.Tifrunner.gnm1.ann1.80FEVW Arachis hypogaea HOM05D003638 ORTHO05D003202 5.1e-08 61.6 113 38.9
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 5.1e-08 61.6 99 42.4
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 5.1e-08 61.6 99 42.4
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 5.1e-08 61.6 99 42.4
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 5.1e-08 61.6 107 42.1
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 8.7e-08 60.8 99 42.4
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 8.7e-08 60.8 99 42.4
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 1.1e-07 60.5 98 49.0
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 1.5e-07 60.1 111 40.5
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 1.5e-07 60.1 111 40.5
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 1.5e-07 60.1 111 40.5
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 1.5e-07 60.1 116 41.4
Medtr4g116480 Medicago truncatula HOM05D003638 ORTHO05D003202 1.5e-07 60.1 103 43.7
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 1.9e-07 59.7 112 39.3
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 1.9e-07 59.7 107 42.1
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 3.3e-07 58.9 157 32.5
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 3.3e-07 58.9 99 43.4
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 3.3e-07 58.9 99 43.4
HanXRQChr05g0137971 Helianthus annuus HOM05D003638 ORTHO05D003202 7.4e-07 57.8 155 29.7
HanXRQChr10g0315321 Helianthus annuus HOM05D003638 ORTHO05D003202 7.4e-07 57.8 160 31.2
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 9.7e-07 57.4 154 28.6
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 9.7e-07 57.4 95 46.3
ECA234G1438 Erigeron canadensis HOM05D003638 ORTHO05D003202 1.3e-06 57.0 166 30.1
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 2.2e-06 56.2 153 31.4
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 2.2e-06 56.2 94 40.4
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 3.7e-06 55.5 163 33.1
HanXRQChr12g0357031 Helianthus annuus HOM05D003638 ORTHO05D003202 4.8e-06 55.1 97 40.2
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 6.3e-06 54.7 98 38.8
PSO170G3167 Papaver somniferum HOM05D003638 ORTHO05D003202 8.2e-06 54.3 94 40.4


User provided reference genes

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