Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 1.1e-126 458.0 610 100.0
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.4e-119 434.5 610 98.2
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 2.0e-102 377.5 610 93.8
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.4e-79 301.6 611 83.6
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 9.6e-41 172.6 230 73.5
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 2.4e-39 167.9 229 73.4
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 2.6e-38 164.5 230 70.0
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.4e-38 164.1 230 70.9
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.5e-38 163.7 230 70.9
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 5.5e-36 156.8 229 72.1
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 7.1e-36 156.4 230 69.1
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 1.2e-35 155.6 229 69.0
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.2e-35 155.6 230 69.6
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 7.9e-35 152.9 229 66.4
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 1.0e-34 152.5 228 68.4
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 1.8e-34 151.8 229 70.7
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.7e-34 149.8 229 71.2
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.5e-33 148.7 229 70.7
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 3.3e-33 147.5 222 71.2
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 5.6e-33 146.7 230 68.7
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 5.6e-33 146.7 230 69.1
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 5.6e-33 146.7 231 66.2
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 1.6e-32 145.2 232 66.4
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 3.7e-32 144.1 204 72.5
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 3.7e-32 144.1 228 66.7
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 1.4e-31 142.1 230 37.8
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 3.1e-31 141.0 203 70.9
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 4.0e-31 140.6 224 68.8
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 5.3e-31 140.2 229 65.5
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 6.9e-31 139.8 230 66.1
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 6.9e-31 139.8 230 66.1
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.5e-30 138.7 196 74.0
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.6e-30 137.9 208 72.6
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 5.8e-30 136.7 226 66.4
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 7.6e-30 136.3 204 70.6
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 7.6e-30 136.3 213 71.4
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.0e-29 136.0 230 65.2
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 1.3e-29 135.6 222 68.9
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 2.2e-29 134.8 204 73.0
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.2e-29 134.8 204 73.0
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 2.9e-29 134.4 204 73.5
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 2.9e-29 134.4 207 72.0
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 4.9e-29 133.7 229 63.8
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 6.5e-29 133.3 203 67.5
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 6.5e-29 133.3 203 68.0
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 8.4e-29 132.9 115 59.1
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 8.4e-29 132.9 193 70.5
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 1.1e-28 132.5 114 58.8
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.4e-28 132.1 204 73.0
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 1.4e-28 132.1 203 68.0
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.9e-28 131.7 203 68.5
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.9e-28 131.7 203 69.0
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 1.9e-28 131.7 229 65.5
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 2.5e-28 131.3 203 68.0
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.5e-28 131.3 203 68.5
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 3.2e-28 131.0 229 60.7
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 5.5e-28 130.2 201 69.7
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 7.1e-28 129.8 228 61.4
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 9.3e-28 129.4 203 68.0
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 1.6e-27 128.6 192 50.5
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 3.5e-27 127.5 203 68.0
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 7.9e-27 126.3 230 62.6
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.0e-26 125.9 226 64.2
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.0e-26 125.9 228 62.7
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 2.3e-26 124.8 185 74.1
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 3.9e-26 124.0 222 63.5
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 5.1e-26 123.6 92 64.1
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 5.1e-26 123.6 204 64.7
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 6.7e-26 123.2 203 66.5
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 6.7e-26 123.2 114 56.1
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 6.7e-26 123.2 202 66.3
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.1e-25 122.5 192 53.6
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 1.5e-25 122.1 203 65.5
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.5e-25 122.1 189 74.6
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.5e-25 122.1 188 73.9
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 1.9e-25 121.7 205 69.3
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 4.3e-25 120.6 195 69.7
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 4.3e-25 120.6 197 69.5
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 7.4e-25 119.8 185 69.7
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 9.6e-25 119.4 185 71.4
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 1.3e-24 119.0 185 47.0
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.6e-24 118.6 185 71.9
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 1.6e-24 118.6 185 70.8
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 1.6e-24 118.6 203 60.1
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 2.8e-24 117.9 185 71.9
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.7e-24 117.5 185 67.6
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 4.8e-24 117.1 92 63.0
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 6.3e-24 116.7 230 62.2
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 8.2e-24 116.3 108 59.3
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 8.2e-24 116.3 203 68.5
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 1.1e-23 115.9 79 70.9
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.1e-23 115.9 202 34.7
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 1.8e-23 115.2 185 70.8
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 1.8e-23 115.2 185 70.8
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.4e-23 114.8 224 32.1
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 4.1e-23 114.0 177 74.6
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 9.0e-23 112.8 197 68.0
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 9.0e-23 112.8 197 68.0
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 3.4e-22 110.9 228 62.7
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 4.5e-22 110.5 183 68.9
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 5.9e-22 110.2 198 60.6
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 7.6e-22 109.8 192 70.3
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.0e-21 109.4 200 35.0
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.0e-21 109.4 202 63.4
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.3e-21 109.0 233 54.5
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 1.3e-21 109.0 203 62.1
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 1.3e-21 109.0 198 34.3
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 1.7e-21 108.6 199 41.2
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.7e-21 108.6 229 55.9
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 2.2e-21 108.2 188 64.9
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 2.2e-21 108.2 188 64.9
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.2e-21 108.2 229 60.7
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 2.9e-21 107.8 188 64.9
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 2.9e-21 107.8 188 64.9
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 3.8e-21 107.5 108 53.7
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 3.8e-21 107.5 233 53.6
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 5.0e-21 107.1 228 59.2
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 5.0e-21 107.1 81 64.2
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 5.0e-21 107.1 228 62.7
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 6.5e-21 106.7 187 63.6
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 8.5e-21 106.3 187 40.6
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 1.1e-20 105.9 166 78.9
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.4e-20 105.5 166 77.7
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 2.5e-20 104.8 204 63.7
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 5.5e-20 103.6 105 53.3
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 5.5e-20 103.6 97 54.6
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 5.5e-20 103.6 203 31.5
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 7.2e-20 103.2 235 56.2
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 7.2e-20 103.2 193 65.3
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 1.2e-19 102.4 185 65.4
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 1.6e-19 102.1 204 62.7
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 2.1e-19 101.7 204 64.2
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 3.6e-19 100.9 186 48.9
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.6e-19 100.9 81 60.5
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 3.6e-19 100.9 81 60.5
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 6.1e-19 100.1 73 60.3
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 3.0e-18 97.8 185 33.0
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 3.9e-18 97.4 165 68.5
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 5.1e-18 97.1 185 65.9
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 5.1e-18 97.1 166 74.1
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 5.1e-18 97.1 109 46.8
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 8.7e-18 96.3 204 62.7
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 8.7e-18 96.3 187 62.0
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 8.7e-18 96.3 187 62.0
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.1e-17 95.9 187 62.6
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.9e-17 95.1 98 53.1
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 2.5e-17 94.7 79 62.0
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 3.3e-17 94.4 185 65.9
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 3.3e-17 94.4 192 64.6
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 4.3e-17 94.0 185 50.8
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 4.3e-17 94.0 167 71.9
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.3e-16 92.4 193 63.7
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.6e-16 92.0 185 51.9
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 3.7e-16 90.9 187 55.1
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.4e-15 89.0 185 44.9
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 1.8e-15 88.6 224 59.8
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.8e-15 88.6 167 71.9
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 9.0e-15 86.3 178 64.0
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 9.0e-15 86.3 83 49.4
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 9.0e-15 86.3 70 60.0
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.3e-13 82.4 202 56.4
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.3e-13 82.4 168 31.0
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.3e-13 82.4 193 26.9
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 3.8e-13 80.9 201 60.2
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.5e-12 78.2 185 62.7
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.6e-11 75.5 202 55.9
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 1.6e-11 75.5 73 46.6
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 4.6e-11 73.9 157 32.5
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 3.3e-09 67.8 203 59.1
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 3.3e-09 67.8 203 59.1
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 7.4e-09 66.6 90 40.0
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 9.7e-09 66.2 70 47.1
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 8.2e-08 63.2 43 65.1
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 1.8e-07 62.0 67 44.8
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 2.4e-07 61.6 160 29.4
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 5.3e-07 60.5 109 34.9
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 6.9e-07 60.1 65 44.6
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 1.5e-06 58.9 43 58.1
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 7.7e-06 56.6 41 58.5


User provided reference genes

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