Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G022890 Cucumis sativus L. HOM05D007232 ORTHO05D000652 3.0e-107 392.1 241 100.0
MELO3C011361.2 Cucumis melo HOM05D007232 ORTHO05D000652 4.7e-92 341.7 241 86.7
ClCG08G011020 Citrullus lanatus HOM05D007232 ORTHO05D000652 2.1e-84 316.2 241 81.7
Sed0015627 Sechium edule HOM05D007232 ORTHO05D000652 4.8e-68 261.9 241 67.6
Sed0016694 Sechium edule HOM05D007232 ORTHO05D000652 4.9e-65 251.9 243 58.4
Lalb_Chr08g0241951 Lupinus albus HOM05D000973 ORTHO05D000652 5.3e-27 125.6 237 38.8
PGR042G3281 Punica granatum HOM05D000973 ORTHO05D000652 5.9e-26 122.1 241 35.3
Lalb_Chr23g0270631 Lupinus albus HOM05D000973 ORTHO05D000652 7.7e-26 121.7 224 35.7
Lalb_Chr11g0065501 Lupinus albus HOM05D000973 ORTHO05D000652 1.0e-25 121.3 223 37.2
Potri.005G166600 Populus trichocarpa HOM05D000973 ORTHO05D000652 1.0e-25 121.3 244 34.0
MD15G1326600 Malus domestica HOM05D007232 ORTHO05D000652 2.9e-25 119.8 230 34.8
Haze_22246 Corylus avellana HOM05D000973 ORTHO05D000652 1.1e-24 117.9 242 36.8
MD01G1027300 Malus domestica HOM05D007232 ORTHO05D000652 3.2e-24 116.3 230 33.5
CiPaw.07G181500 Carya illinoinensis HOM05D000973 ORTHO05D000652 5.5e-24 115.5 238 34.9
Eucgr.F02438 Eucalyptus grandis HOM05D000973 ORTHO05D000652 1.2e-23 114.4 247 38.9
RcHm_v2.0_Chr7g0239521 Rosa chinensis HOM05D000973 ORTHO05D000652 1.2e-23 114.4 224 35.3
Cfa013620 Carpinus fangiana HOM05D000973 ORTHO05D000652 1.6e-23 114.0 247 38.9
FAN08G1947 Fragaria x ananassa HOM05D000973 ORTHO05D000652 1.6e-23 114.0 226 34.5
Prupe.1G513900 Prunus persica HOM05D000973 ORTHO05D000652 1.6e-23 114.0 230 35.2
TWI36G0485 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 1.6e-23 114.0 223 40.4
Psat5g137520 Pisum sativum HOM05D000973 ORTHO05D000652 2.1e-23 113.6 240 31.2
FAN13G2686 Fragaria x ananassa HOM05D000973 ORTHO05D000652 4.7e-23 112.5 226 34.1
QL12p036377 Quercus lobata HOM05D007232 ORTHO05D000652 6.1e-23 112.1 223 39.9
Ca_15240_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 7.9e-23 111.7 220 33.2
FvH4_5g37770 Fragaria vesca HOM05D000973 ORTHO05D000652 7.9e-23 111.7 226 34.1
FAN18G1204 Fragaria x ananassa HOM05D000973 ORTHO05D000652 7.9e-23 111.7 226 34.1
Glyma.04G103700 Glycine max HOM05D000973 ORTHO05D000652 7.9e-23 111.7 226 37.6
TAR381G1313 Trochodendron aralioides HOM05D000973 ORTHO05D000652 3.0e-22 109.8 247 32.4
CSS0050475 Camellia sinensis var. sinensis HOM05D007232 ORTHO05D000652 8.8e-22 108.2 223 33.6
TAR628G1220 Trochodendron aralioides HOM05D000973 ORTHO05D000652 8.8e-22 108.2 226 35.0
FAN04G1532 Fragaria x ananassa HOM05D000973 ORTHO05D000652 1.1e-21 107.8 226 33.2
Prupe.6G182500 Prunus persica HOM05D007232 ORTHO05D000652 7.4e-21 105.1 231 32.5
Ciclev10027435m.g Citrus clementina HOM05D007232 ORTHO05D000652 1.7e-20 104.0 220 30.9
TWI56G1376 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 1.7e-20 104.0 220 32.3
Glyma.06G104900 Glycine max HOM05D000973 ORTHO05D000652 6.3e-20 102.1 227 34.4
Lj1g0016679 Lotus japonicus HOM05D000973 ORTHO05D000652 1.1e-19 101.3 227 35.7
Cfa002682 Carpinus fangiana HOM05D000973 ORTHO05D000652 1.4e-19 100.9 249 32.5
Eucgr.F00299 Eucalyptus grandis HOM05D000973 ORTHO05D000652 5.3e-19 99.0 244 34.4
CiPaw.04G098100 Carya illinoinensis HOM05D000973 ORTHO05D000652 7.0e-19 98.6 229 32.3
QL06p049910 Quercus lobata HOM05D000973 ORTHO05D000652 7.0e-19 98.6 227 33.5
Hma1.2p1_0237F.1_g099320 Hydrangea macrophylla HOM05D000973 ORTHO05D000652 1.6e-18 97.4 243 32.1
Hma1.2p1_1783F.1_g302128 Hydrangea macrophylla HOM05D000973 ORTHO05D000652 1.6e-18 97.4 243 32.1
Rhsim10G0159300 Rhododendron simsii HOM05D007232 ORTHO05D000652 2.0e-18 97.1 223 30.5
Sabra07G0074600 Salix brachista HOM05D007232 ORTHO05D000652 3.5e-18 96.3 228 32.9
PGR044G0913 Punica granatum HOM05D007232 ORTHO05D000652 4.5e-18 95.9 242 32.2
VMungo1309G1651 Vigna mungo HOM05D000609 ORTHO05D000462 7.7e-18 95.1 246 33.3
PGSC0003DMG400008558 Solanum tuberosum HOM05D007232 ORTHO05D000652 1.0e-17 94.7 238 39.5
PSO781G0167 Papaver somniferum HOM05D000973 ORTHO05D000652 6.5e-17 92.0 225 28.0
Potri.005G077100 Populus trichocarpa HOM05D007232 ORTHO05D000652 6.5e-17 92.0 226 30.5
MD15G1366200 Malus domestica HOM05D007232 ORTHO05D000652 1.5e-16 90.9 231 29.9
Manes.18G068700 Manihot esculenta HOM05D000973 ORTHO05D000652 3.2e-16 89.7 244 27.0
Cpa.g.sc36.113 Carica papaya HOM05D000973 ORTHO05D000652 5.5e-16 89.0 243 28.4
Sabra05G0063500 Salix brachista HOM05D007232 ORTHO05D000652 5.5e-16 89.0 245 29.4
AUR62019200 Chenopodium quinoa HOM05D007232 ORTHO05D000652 1.6e-15 87.4 228 29.8
Lalb_Chr13g0296021 Lupinus albus HOM05D007232 ORTHO05D000652 1.6e-15 87.4 221 31.2
Phvul.009G029700 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 1.6e-15 87.4 219 34.7
Lsat_1_v5_gn_9_43820 Lactuca sativa HOM05D007232 ORTHO05D000652 2.1e-15 87.0 245 29.8
EL10Ac4g10347 Beta vulgaris HOM05D007232 ORTHO05D000652 2.7e-15 86.7 232 28.9
Lalb_Chr12g0203771 Lupinus albus HOM05D007232 ORTHO05D000652 2.7e-15 86.7 220 36.4
Glyma.05G179200 Glycine max HOM05D000973 ORTHO05D000652 3.6e-15 86.3 225 34.2
Manes.12G136600 Manihot esculenta HOM05D007232 ORTHO05D000652 3.6e-15 86.3 227 30.8
Ca_17729_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 6.1e-15 85.5 248 30.2
TPR.G2188 Trifolium pratense HOM05D007232 ORTHO05D000652 8.0e-15 85.1 220 36.4
Psat7g055040 Pisum sativum HOM05D007232 ORTHO05D000652 1.0e-14 84.7 246 30.5
MBI02_g42091_MAGBIO Magnolia biondii HOM05D000973 ORTHO05D000652 3.0e-14 83.2 252 30.6
RcHm_v2.0_Chr2g0115011 Rosa chinensis HOM05D000973 ORTHO05D000652 3.0e-14 83.2 226 28.3
Glyma.08G136900 Glycine max HOM05D000973 ORTHO05D000652 4.0e-14 82.8 232 32.3
Duzib147G1351 Durio zibethinus HOM05D007232 ORTHO05D000652 6.7e-14 82.0 224 29.9
Gorai.003G038400 Gossypium raimondii HOM05D007232 ORTHO05D000652 8.8e-14 81.6 244 30.3
Gohir.D03G036600 Gossypium hirsutum HOM05D007232 ORTHO05D000652 1.5e-13 80.9 244 29.1
Thecc.01G104000 Theobroma cacao HOM05D007232 ORTHO05D000652 1.5e-13 80.9 225 32.0
Actinidia36596 Actinidia chinensis HOM05D007232 ORTHO05D000652 2.6e-13 80.1 212 28.8
AUR62000030 Chenopodium quinoa HOM05D007232 ORTHO05D000652 2.6e-13 80.1 227 28.6
Haze_24953 Corylus avellana HOM05D000973 ORTHO05D000652 7.5e-13 78.6 187 31.6
Aqoxy4G02373 Aquilegia oxysepala HOM05D000973 ORTHO05D000652 9.7e-13 78.2 226 28.8
ATR0564G206 Amborella trichopoda HOM05D000973 ORTHO05D000652 1.7e-12 77.4 253 35.2
Medtr3g074150 Medicago truncatula HOM05D000973 ORTHO05D000652 1.7e-12 77.4 231 32.5
Hma1.2p1_0308F.1_g120090 Hydrangea macrophylla HOM05D007232 ORTHO05D000652 2.2e-12 77.0 219 30.1
Duzib264G0914 Durio zibethinus HOM05D007232 ORTHO05D000652 4.8e-12 75.9 247 29.1
Gohir.A02G144000 Gossypium hirsutum HOM05D007232 ORTHO05D000652 6.3e-12 75.5 244 28.3
Nn1g05316 Nelumbo nucifera HOM05D000973 ORTHO05D000652 6.3e-12 75.5 266 28.9
Nn1g05317 Nelumbo nucifera HOM05D000973 ORTHO05D000652 6.3e-12 75.5 266 28.9
THA.LOC104807704 Tarenaya hassleriana HOM05D007232 ORTHO05D000652 3.1e-11 73.2 221 30.8
Aa31LG7G14550 Aethionema arabicum HOM05D007232 ORTHO05D000652 5.3e-11 72.4 216 30.6
Sp4g01240 Schrenkiella parvula HOM05D007232 ORTHO05D000652 5.3e-11 72.4 219 30.6
CARHR113340 Cardamine hirsuta HOM05D007232 ORTHO05D000652 1.2e-10 71.2 218 29.4
PSO541G5618 Papaver somniferum HOM05D000973 ORTHO05D000652 2.7e-10 70.1 206 26.2
arahy.Tifrunner.gnm1.ann1.VXW06X Arachis hypogaea HOM05D000973 ORTHO05D000652 3.5e-10 69.7 230 26.5
Gohir.D12G096300 Gossypium hirsutum HOM05D007232 ORTHO05D000652 3.5e-10 69.7 246 27.6
Gorai.008G104500 Gossypium raimondii HOM05D007232 ORTHO05D000652 3.5e-10 69.7 246 27.6
BcaC07g41090 Brassica carinata HOM05D007232 ORTHO05D000652 4.5e-10 69.3 219 32.0
C08p40920 Brassica napus HOM05D007232 ORTHO05D000652 4.5e-10 69.3 219 32.0
Peaxi162Scf00295g00092 Petunia axillaris HOM05D007232 ORTHO05D000652 4.5e-10 69.3 238 27.3
Solyc04g054960.1 Solanum lycopersicum HOM05D007232 ORTHO05D000652 7.7e-10 68.6 225 28.0
BolC4t26712H Brassica oleracea HOM05D007232 ORTHO05D000652 1.0e-09 68.2 219 30.1
Thhalv10000276m.g Eutrema salsugineum HOM05D007232 ORTHO05D000652 1.0e-09 68.2 218 29.4
VMungo0251G1798 Vigna mungo HOM05D007232 ORTHO05D000652 1.3e-09 67.8 235 28.5
Lalb_Chr11g0075311 Lupinus albus HOM05D007232 ORTHO05D000652 1.7e-09 67.4 223 28.7
Peaxi162Scf01263g00012 Petunia axillaris HOM05D007232 ORTHO05D000652 1.7e-09 67.4 236 27.5
Sopen04g024800 Solanum pennellii HOM05D007232 ORTHO05D000652 1.7e-09 67.4 229 27.1
Ah.06g193060 Amaranthus hybridus HOM05D007232 ORTHO05D000652 2.2e-09 67.0 205 30.2
BcaC02g08732 Brassica carinata HOM05D007232 ORTHO05D000652 2.2e-09 67.0 219 30.1
C04p51230 Brassica napus HOM05D007232 ORTHO05D000652 2.2e-09 67.0 219 30.1
FvH4_1g21180 Fragaria vesca HOM05D007232 ORTHO05D000652 2.2e-09 67.0 223 33.6
Medtr8g090320 Medicago truncatula HOM05D007232 ORTHO05D000652 2.2e-09 67.0 238 32.8
FAN19G3039 Fragaria x ananassa HOM05D007232 ORTHO05D000652 2.9e-09 66.6 223 33.2
Phvul.002G255000 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 2.9e-09 66.6 228 28.5
BcaB08g35048 Brassica carinata HOM05D007232 ORTHO05D000652 3.8e-09 66.2 219 30.1
Carub.0004s0134 Capsella rubella HOM05D007232 ORTHO05D000652 3.8e-09 66.2 218 28.9
PGSC0003DMG400020617 Solanum tuberosum HOM05D007232 ORTHO05D000652 3.8e-09 66.2 229 27.1
BolC8t51657H Brassica oleracea HOM05D007232 ORTHO05D000652 5.0e-09 65.9 217 31.3
CAN.G383.12 Capsicum annuum HOM05D007232 ORTHO05D000652 5.0e-09 65.9 234 26.5
COL.COLO4_09942 Corchorus olitorius HOM05D007232 ORTHO05D000652 5.0e-09 65.9 229 35.4
MD08G1180500 Malus domestica HOM05D007232 ORTHO05D000652 8.5e-09 65.1 181 28.7
Sed0026403 Sechium edule HOM05D000234 ORTHO05D001258 8.5e-09 65.1 253 26.1
CAN.G725.2 Capsicum annuum HOM05D007232 ORTHO05D000652 1.1e-08 64.7 232 27.2
Oeu056593.1 Olea europaea HOM05D007232 ORTHO05D000652 1.1e-08 64.7 235 26.0
AT2G22180 Arabidopsis thaliana HOM05D007232 ORTHO05D000652 1.5e-08 64.3 219 29.2
Sp7g36140 Schrenkiella parvula HOM05D007232 ORTHO05D000652 1.9e-08 63.9 221 31.2
COL.COLO4_16431 Corchorus olitorius HOM05D007232 ORTHO05D000652 2.5e-08 63.5 35 71.4
Migut.H02369 Erythranthe guttata HOM05D007232 ORTHO05D000652 2.5e-08 63.5 232 28.0
FAN28G0479 Fragaria x ananassa HOM05D007232 ORTHO05D000652 3.2e-08 63.2 220 34.5
AL4G11660 Arabidopsis lyrata HOM05D007232 ORTHO05D000652 4.2e-08 62.8 218 33.0
A09p57710 Brassica napus HOM05D007232 ORTHO05D000652 5.5e-08 62.4 217 29.5
BraA09t41164Z Brassica rapa HOM05D007232 ORTHO05D000652 5.5e-08 62.4 217 29.5
FAN23G0488 Fragaria x ananassa HOM05D007232 ORTHO05D000652 5.5e-08 62.4 220 33.6
AL7G11950 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 9.4e-08 61.6 213 31.0
Solyc05g051890.1 Solanum lycopersicum HOM05D007232 ORTHO05D000652 9.4e-08 61.6 229 26.2
TWI74G0906 Tripterygium wilfordii HOM05D007232 ORTHO05D000652 9.4e-08 61.6 183 31.1
Nitab4.5_0000104g0220 Nicotiana tabacum HOM05D007232 ORTHO05D000652 1.2e-07 61.2 234 25.6
TAR376G0669 Trochodendron aralioides HOM05D000973 ORTHO05D000652 1.2e-07 61.2 36 72.2
Atru.chr4.115 Acer truncatum HOM05D007232 ORTHO05D000652 1.6e-07 60.8 221 28.5
CARHR246970 Cardamine hirsuta HOM05D007232 ORTHO05D000652 3.6e-07 59.7 219 30.1
PGSC0003DMG400021819 Solanum tuberosum HOM05D007232 ORTHO05D000652 3.6e-07 59.7 229 25.8
Dinv16299 Davidia involucrata HOM05D007232 ORTHO05D000652 4.7e-07 59.3 154 29.9
BcaC02g08684 Brassica carinata HOM05D007232 ORTHO05D000652 8.0e-07 58.5 218 31.2
THA.LOC104804156 Tarenaya hassleriana HOM05D007232 ORTHO05D000652 8.0e-07 58.5 241 27.8
Thecc.08G109400 Theobroma cacao HOM05D000973 ORTHO05D000652 8.0e-07 58.5 32 75.0
Actinidia10311 Actinidia chinensis HOM05D000973 ORTHO05D000652 1.0e-06 58.2 194 26.8
Manes.11G112400 Manihot esculenta HOM05D000973 ORTHO05D000652 1.0e-06 58.2 246 27.2
Sc03g0002150 Simmondsia chinensis HOM05D007232 ORTHO05D000652 1.0e-06 58.2 218 23.9
Cpa.g.c29749 Carica papaya HOM05D007232 ORTHO05D000652 1.4e-06 57.8 223 27.8
A04p16690 Brassica napus HOM05D007232 ORTHO05D000652 1.8e-06 57.4 219 33.3
BraA04t17302Z Brassica rapa HOM05D007232 ORTHO05D000652 1.8e-06 57.4 219 33.3
Manes.04G052400 Manihot esculenta HOM05D000973 ORTHO05D000652 3.0e-06 56.6 224 25.0
PGSC0003DMG400002014 Solanum tuberosum HOM05D000973 ORTHO05D000652 3.0e-06 56.6 234 29.5
ClCG02G024220 Citrullus lanatus HOM05D000234 ORTHO05D001258 4.0e-06 56.2 229 24.9
TAR636G1424 Trochodendron aralioides HOM05D000973 ORTHO05D000652 5.2e-06 55.8 228 27.6
CAN.G864.5 Capsicum annuum HOM05D000973 ORTHO05D000652 6.8e-06 55.5 231 24.7
AUR62025118 Chenopodium quinoa HOM05D000973 ORTHO05D000652 6.8e-06 55.5 232 25.4
Migut.N02910 Erythranthe guttata HOM05D000161 ORTHO05D000111 6.8e-06 55.5 29 75.9
Nitab4.5_0002378g0010 Nicotiana tabacum HOM05D007232 ORTHO05D000652 6.8e-06 55.5 223 26.9
Nitab4.5_0004699g0040 Nicotiana tabacum HOM05D000973 ORTHO05D000652 6.8e-06 55.5 247 29.1
HPP92_016345 Vanilla planifolia HOM05D007232 ORTHO05D000652 6.8e-06 55.5 218 24.3
AL4G20640 Arabidopsis lyrata HOM05D000973 ORTHO05D000652 8.8e-06 55.1 228 25.0
Ciclev10016351m.g Citrus clementina HOM05D000973 ORTHO05D000652 8.8e-06 55.1 246 32.5


User provided reference genes

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