Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G019720 Cucumis sativus L. HOM05D001411 ORTHO05D004166 3.8e-86 322.0 238 100.0
CsaV3_6G005270 Cucumis sativus L. HOM05D001411 ORTHO05D004166 3.4e-66 255.8 326 69.9
MELO3C008343.2 Cucumis melo HOM05D001411 ORTHO05D004166 1.3e-65 253.8 326 68.4
ClCG08G006970 Citrullus lanatus HOM05D001411 ORTHO05D004166 3.7e-57 225.7 327 61.2
Sed0011174 Sechium edule HOM05D001411 ORTHO05D004166 4.7e-52 208.8 326 59.5
Atru.chr13.2134 Acer truncatum HOM05D001411 ORTHO05D004166 5.4e-24 115.5 264 35.2
Ciclev10001142m.g Citrus clementina HOM05D001411 ORTHO05D004166 2.7e-23 113.2 264 36.7
Phvul.007G079600 Phaseolus vulgaris HOM05D001411 ORTHO05D004166 5.1e-22 109.0 269 32.7
Haze_17749 Corylus avellana HOM05D001411 ORTHO05D004166 1.5e-21 107.5 267 36.0
VMungo0720G1638 Vigna mungo HOM05D001411 ORTHO05D004166 2.5e-21 106.7 267 33.3
Medtr6g035315 Medicago truncatula HOM05D001411 ORTHO05D004166 3.3e-21 106.3 267 33.7
TPR.G36700 Trifolium pratense HOM05D001411 ORTHO05D004166 3.3e-21 106.3 266 34.2
FAN15G2182 Fragaria x ananassa HOM05D001411 ORTHO05D004166 1.6e-20 104.0 266 34.6
Cfa018325 Carpinus fangiana HOM05D001411 ORTHO05D004166 2.8e-20 103.2 267 34.1
FAN27G1842 Fragaria x ananassa HOM05D001411 ORTHO05D004166 2.8e-20 103.2 265 34.3
Psat1g104720 Pisum sativum HOM05D001411 ORTHO05D004166 6.2e-20 102.1 263 33.5
RcHm_v2.0_Chr6g0275551 Rosa chinensis HOM05D001411 ORTHO05D004166 6.2e-20 102.1 265 34.0
FAN24G3548 Fragaria x ananassa HOM05D001411 ORTHO05D004166 1.1e-19 101.3 265 40.0
Glyma.10G225300 Glycine max HOM05D001411 ORTHO05D004166 1.1e-19 101.3 267 33.0
Thecc.08G150700 Theobroma cacao HOM05D001411 ORTHO05D004166 1.1e-19 101.3 265 36.6
QL02p023983 Quercus lobata HOM05D001411 ORTHO05D004166 2.4e-19 100.1 267 37.1
Potri.002G068700 Populus trichocarpa HOM05D001411 ORTHO05D004166 3.1e-19 99.8 263 36.5
FvH4_2g13860 Fragaria vesca HOM05D001411 ORTHO05D004166 5.3e-19 99.0 266 33.8
VMungo0464G0962 Vigna mungo HOM05D001411 ORTHO05D004166 5.3e-19 99.0 264 34.5
Glyma.20G166500 Glycine max HOM05D001411 ORTHO05D004166 1.2e-18 97.8 268 37.3
FAN20G0166 Fragaria x ananassa HOM05D001411 ORTHO05D004166 2.0e-18 97.1 265 37.7
COL.COLO4_37833 Corchorus olitorius HOM05D001411 ORTHO05D004166 2.6e-18 96.7 266 35.3
Lj5g0009442 Lotus japonicus HOM05D001411 ORTHO05D004166 4.5e-18 95.9 186 36.6
Phvul.004G095500 Phaseolus vulgaris HOM05D001411 ORTHO05D004166 9.9e-18 94.7 265 34.3
Potri.005G191700 Populus trichocarpa HOM05D001411 ORTHO05D004166 2.2e-17 93.6 266 34.6
Manes.18G091000 Manihot esculenta HOM05D001411 ORTHO05D004166 2.9e-17 93.2 265 39.2
Prupe.8G028500 Prunus persica HOM05D001411 ORTHO05D004166 3.8e-17 92.8 264 34.1
Manes.02G179001 Manihot esculenta HOM05D001411 ORTHO05D004166 4.9e-17 92.4 263 32.7
Dinv41088 Davidia involucrata HOM05D001411 ORTHO05D004166 6.4e-17 92.0 233 37.8
Sabra05G0146500 Salix brachista HOM05D001411 ORTHO05D004166 6.4e-17 92.0 265 34.3
Sabra02G0054000 Salix brachista HOM05D001411 ORTHO05D004166 1.4e-16 90.9 266 34.6
Lalb_Chr06g0161571 Lupinus albus HOM05D001411 ORTHO05D004166 4.2e-16 89.4 177 41.2
Manes.18G091500 Manihot esculenta HOM05D001411 ORTHO05D004166 7.1e-16 88.6 266 37.6
MD10G1024800 Malus domestica HOM05D001411 ORTHO05D004166 9.3e-16 88.2 265 33.2
Gorai.005G079200 Gossypium raimondii HOM05D001411 ORTHO05D004166 3.5e-15 86.3 268 35.1
Lalb_Chr21g0305421 Lupinus albus HOM05D001411 ORTHO05D004166 3.5e-15 86.3 266 34.2
TPR.G12686 Trifolium pratense HOM05D001411 ORTHO05D004166 4.6e-15 85.9 269 30.1
Gohir.A01G197800 Gossypium hirsutum HOM05D001411 ORTHO05D004166 6.0e-15 85.5 265 33.6
Gohir.D02G070100 Gossypium hirsutum HOM05D001411 ORTHO05D004166 6.0e-15 85.5 270 34.8
Lj2g0009900 Lotus japonicus HOM05D001411 ORTHO05D004166 7.9e-15 85.1 265 35.5
Gorai.002G231400 Gossypium raimondii HOM05D001411 ORTHO05D004166 1.8e-14 84.0 267 33.0
Gohir.D01G188000 Gossypium hirsutum HOM05D001411 ORTHO05D004166 3.9e-14 82.8 267 33.3
THA.LOC104813711 Tarenaya hassleriana HOM05D001411 ORTHO05D004166 5.1e-14 82.4 268 30.2
Ca_18818_v3 Cicer arietinum L. HOM05D001411 ORTHO05D004166 8.7e-14 81.6 264 31.1
CANSAT25G0284 Cannabis sativa HOM05D001411 ORTHO05D004166 1.5e-13 80.9 266 35.7
Dinv25858 Davidia involucrata HOM05D001411 ORTHO05D004166 1.9e-13 80.5 266 28.9
CiPaw.15G016600 Carya illinoinensis HOM05D001411 ORTHO05D004166 3.3e-13 79.7 266 35.3
Eucgr.F04240 Eucalyptus grandis HOM05D001411 ORTHO05D004166 3.3e-13 79.7 265 34.3
Actinidia29526 Actinidia chinensis HOM05D001411 ORTHO05D004166 4.3e-13 79.3 187 33.2
Actinidia04764 Actinidia chinensis HOM05D001411 ORTHO05D004166 9.6e-13 78.2 189 34.9
CSS0010702 Camellia sinensis var. sinensis HOM05D001411 ORTHO05D004166 1.3e-12 77.8 269 30.9
CSS0038066 Camellia sinensis var. sinensis HOM05D001411 ORTHO05D004166 1.3e-12 77.8 269 30.9
Gohir.A02G064200 Gossypium hirsutum HOM05D001411 ORTHO05D004166 1.3e-12 77.8 268 35.8
Lalb_Chr19g0130311 Lupinus albus HOM05D001411 ORTHO05D004166 2.8e-12 76.6 264 30.7
Oeu014496.1 Olea europaea HOM05D001411 ORTHO05D004166 4.8e-12 75.9 187 33.2
Ca_10690_v3 Cicer arietinum L. HOM05D001411 ORTHO05D004166 6.2e-12 75.5 209 32.5
AL1G34250 Arabidopsis lyrata HOM05D001411 ORTHO05D004166 1.1e-11 74.7 266 34.2
Lalb_Chr03g0035281 Lupinus albus HOM05D001411 ORTHO05D004166 1.8e-11 73.9 178 31.5
MD05G1024300 Malus domestica HOM05D001411 ORTHO05D004166 1.8e-11 73.9 266 35.3
DCAR_010245 Daucus carota HOM05D001411 ORTHO05D004166 2.4e-11 73.6 265 29.1
TWI60G0383 Tripterygium wilfordii HOM05D001411 ORTHO05D004166 4.0e-11 72.8 264 28.0
Cpa.g.sc2145.1 Carica papaya HOM05D001411 ORTHO05D004166 5.3e-11 72.4 259 31.3
Duzib116G0275 Durio zibethinus HOM05D001411 ORTHO05D004166 6.9e-11 72.0 268 34.0
Thhalv10010018m.g Eutrema salsugineum HOM05D001411 ORTHO05D004166 1.2e-10 71.2 264 34.1
Medtr1g098920 Medicago truncatula HOM05D001411 ORTHO05D004166 1.5e-10 70.9 268 29.5
Sp1g18840 Schrenkiella parvula HOM05D001411 ORTHO05D004166 1.5e-10 70.9 267 33.7
Sed0005374 Sechium edule HOM05D001411 ORTHO05D004166 1.5e-10 70.9 225 35.1
TAR381G0535 Trochodendron aralioides HOM05D001411 ORTHO05D004166 2.6e-10 70.1 187 38.0
Cc03_g13070 Coffea canephora HOM05D001411 ORTHO05D004166 3.4e-10 69.7 266 27.8
Peaxi162Scf01184g00004 Petunia axillaris HOM05D001411 ORTHO05D004166 2.9e-09 66.6 265 34.0
TAR628G1484 Trochodendron aralioides HOM05D001411 ORTHO05D004166 4.9e-09 65.9 189 36.5
TAR625G0727 Trochodendron aralioides HOM05D001411 ORTHO05D004166 1.1e-08 64.7 186 37.1
CiPaw.16G012600 Carya illinoinensis HOM05D001411 ORTHO05D004166 1.4e-08 64.3 224 32.1
Nitab4.5_0000165g0090 Nicotiana tabacum HOM05D001411 ORTHO05D004166 1.4e-08 64.3 266 31.2
PGR044G0786 Punica granatum HOM05D001411 ORTHO05D004166 1.9e-08 63.9 263 30.4
DCAR_001132 Daucus carota HOM05D001411 ORTHO05D004166 2.5e-08 63.5 266 26.3
Hma1.2p1_0105F.1_g050750 Hydrangea macrophylla HOM05D001411 ORTHO05D004166 3.2e-08 63.2 266 29.7
Carub.0001s2063 Capsella rubella HOM05D001411 ORTHO05D004166 7.1e-08 62.0 267 35.2
AT1G21200 Arabidopsis thaliana HOM05D001411 ORTHO05D004166 9.3e-08 61.6 265 35.5
Aqoxy5G02097 Aquilegia oxysepala HOM05D001411 ORTHO05D004166 1.2e-07 61.2 268 30.6
Glyma.16G167700 Glycine max HOM05D001411 ORTHO05D004166 2.7e-07 60.1 184 29.9
Aa31LG7G5290 Aethionema arabicum HOM05D001411 ORTHO05D004166 4.6e-07 59.3 265 30.9
MSTRG.22374 Avicennia marina HOM05D001411 ORTHO05D004166 1.3e-06 57.8 187 27.8
Oeu023264.1 Olea europaea HOM05D001411 ORTHO05D004166 1.3e-06 57.8 272 28.3
GSVIVG01034521001 Vitis vinifera HOM05D001411 ORTHO05D004166 3.0e-06 56.6 151 34.4
Dinv19334 Davidia involucrata HOM05D001411 ORTHO05D004166 3.9e-06 56.2 269 26.8
Lj4P696T15 Lonicera japonica HOM05D001411 ORTHO05D004166 3.9e-06 56.2 255 28.2
PSO478G0017 Papaver somniferum HOM05D001411 ORTHO05D004166 3.9e-06 56.2 268 31.0
C05p19940 Brassica napus HOM05D001411 ORTHO05D004166 5.1e-06 55.8 251 27.9
BolC5t30692H Brassica oleracea HOM05D001411 ORTHO05D004166 5.1e-06 55.8 251 27.9
A06p17240 Brassica napus HOM05D001411 ORTHO05D004166 6.7e-06 55.5 259 28.2
Psat6g193520 Pisum sativum HOM05D001411 ORTHO05D004166 6.7e-06 55.5 277 30.7
Nitab4.5_0001294g0030 Nicotiana tabacum HOM05D001411 ORTHO05D004166 8.7e-06 55.1 188 38.3


User provided reference genes

Program Settings