Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.1e-135 485.7 247 100.0
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 3.5e-135 485.0 247 99.2
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.5e-133 479.6 247 98.0
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 3.3e-133 478.4 247 97.6
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 2.5e-125 452.2 247 91.9
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 3.3e-125 451.8 246 91.9
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 7.4e-125 450.7 247 90.7
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 9.7e-125 450.3 245 90.6
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 90.7
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 90.7
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 90.7
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 90.7
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.2e-124 449.1 247 90.3
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 4.8e-124 448.0 247 91.1
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 4.8e-124 448.0 245 90.2
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 245 89.8
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 90.3
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 89.5
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 89.5
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 89.5
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 90.3
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.1e-123 445.3 247 89.9
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 4.1e-123 444.9 248 90.3
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 4.1e-123 444.9 245 89.8
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 89.9
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 89.5
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 89.1
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 89.1
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 9.0e-123 443.7 244 90.2
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 9.0e-123 443.7 245 90.6
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.9
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.5e-122 443.0 245 89.0
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.5e-122 443.0 245 89.0
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 1.5e-122 443.0 247 89.1
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 1.5e-122 443.0 245 89.4
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.1
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.6e-122 442.2 243 90.5
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.6e-122 442.2 243 90.5
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 2.6e-122 442.2 245 89.0
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 2.6e-122 442.2 244 89.8
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.1
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.1
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 88.7
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 89.1
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 4.5e-122 441.4 247 88.3
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 4.5e-122 441.4 244 89.3
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.9
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.1
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 87.9
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.0e-121 440.3 247 87.4
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 88.3
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 1.7e-121 439.5 247 87.4
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 2.2e-121 439.1 247 87.9
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 2.9e-121 438.7 247 88.3
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 2.9e-121 438.7 247 87.9
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 87.9
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 88.3
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 6.5e-121 437.6 246 88.2
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 8.5e-121 437.2 245 87.8
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 8.5e-121 437.2 246 87.4
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.1e-120 436.8 250 87.2
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 1.1e-120 436.8 243 89.3
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.4e-120 436.4 248 88.3
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.4e-120 436.4 247 86.6
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.4e-120 436.4 245 87.8
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 87.4
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 87.4
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 87.4
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 87.0
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 88.7
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 2.5e-120 435.6 247 87.4
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 2.5e-120 435.6 247 87.4
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 2.5e-120 435.6 247 87.4
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 2.5e-120 435.6 245 88.2
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 5.5e-120 434.5 247 87.0
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 5.5e-120 434.5 247 87.0
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 7.2e-120 434.1 245 86.9
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 7.2e-120 434.1 247 87.0
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 9.4e-120 433.7 248 87.1
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 1.2e-119 433.3 246 87.8
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 1.2e-119 433.3 246 87.8
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 1.2e-119 433.3 247 86.2
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 1.2e-119 433.3 244 88.9
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 1.2e-119 433.3 245 87.8
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 1.6e-119 433.0 245 87.3
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.6e-119 433.0 247 87.4
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 2.1e-119 432.6 246 86.6
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 2.1e-119 432.6 245 87.8
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 2.7e-119 432.2 247 86.6
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.7e-119 432.2 246 87.0
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 3.6e-119 431.8 245 87.3
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 3.6e-119 431.8 248 87.5
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 4.6e-119 431.4 248 87.1
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 4.6e-119 431.4 248 87.1
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 4.6e-119 431.4 248 86.3
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.1e-119 431.0 247 86.6
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 1.0e-118 430.3 248 87.1
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.0e-118 430.3 245 86.1
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.4e-118 429.9 245 86.1
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.4e-118 429.9 247 85.8
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 1.4e-118 429.9 247 85.8
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 1.8e-118 429.5 247 85.0
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 1.8e-118 429.5 247 85.0
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 1.8e-118 429.5 247 85.0
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 1.8e-118 429.5 247 85.0
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 2.3e-118 429.1 248 87.1
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 3.0e-118 428.7 248 86.3
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 3.9e-118 428.3 248 87.1
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 6.7e-118 427.6 247 84.6
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.7e-118 427.6 247 85.4
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 6.7e-118 427.6 248 85.9
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-117 426.8 247 84.6
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 1.1e-117 426.8 247 85.4
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.5e-117 426.4 245 86.9
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.5e-117 426.4 247 84.6
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 4.3e-117 424.9 270 81.1
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 5.7e-117 424.5 234 91.0
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 2.8e-116 422.2 248 87.1
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 6.3e-116 421.0 261 82.4
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 8.2e-116 420.6 248 86.7
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.1e-115 420.2 247 84.2
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 2.4e-115 419.1 306 72.9
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 4.5e-114 414.8 248 84.7
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 7.7e-114 414.1 290 74.5
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 8.5e-113 410.6 286 75.5
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 6.1e-111 404.4 247 83.0
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 5.1e-110 401.4 334 66.2
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 8.8e-110 400.6 249 80.7
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 7.4e-109 397.5 249 80.7
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 1.7e-108 396.4 245 81.2
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.4e-107 393.3 251 78.5
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 4.1e-107 391.7 251 78.9
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 5.3e-107 391.3 253 77.9
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 3.5e-106 388.7 266 77.4
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.7e-105 386.3 211 89.1
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.7e-105 386.3 211 89.1
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.9e-105 385.6 251 76.9
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 4.2e-104 381.7 214 88.8
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 5.7e-101 371.3 212 86.8
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.2e-98 363.6 360 57.8
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 5.7e-93 344.7 245 72.7
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 1.0e-89 334.0 179 96.1
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.3e-89 333.6 247 73.7
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 6.1e-87 324.7 198 85.4
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 2.6e-85 319.3 245 70.2
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 2.5e-80 302.8 166 89.2
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 4.2e-80 302.0 172 88.4
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 9.5e-80 300.8 172 88.4
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 6.1e-79 298.1 165 88.5
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.9e-72 276.6 280 55.7
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 1.2e-61 240.7 242 50.0
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 4.6e-58 228.8 138 83.3
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 2.5e-48 196.4 232 44.0
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 7.3e-48 194.9 247 51.4
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 3.1e-46 189.5 247 44.5
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 2.9e-44 183.0 102 86.3
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 3.3e-40 169.5 199 53.3
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.3e-39 167.5 97 83.5
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 4.9e-36 155.6 165 54.5
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 6.9e-30 135.2 139 54.7
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 7.6e-29 131.7 82 80.5
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 2.7e-26 123.2 229 37.1
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 4.6e-26 122.5 82 75.6
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 1.3e-25 120.9 83 72.3
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 3.0e-25 119.8 87 70.1
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 3.3e-24 116.3 166 47.0
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 4.9e-20 102.4 100 50.0
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 2.5e-16 90.1 57 80.7
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 1.6e-15 87.4 51 82.4
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 2.8e-15 86.7 47 85.1
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 2.4e-14 83.6 51 84.3
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 1.5e-13 80.9 52 84.6
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 2.2e-12 77.0 74 58.1
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 4.2e-11 72.8 79 53.2
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 9.3e-11 71.6 38 86.8
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.8e-09 67.4 45 80.0
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.3e-09 67.0 94 46.8
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 3.9e-09 66.2 94 47.9
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 2.8e-07 60.1 36 72.2
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 2.8e-07 60.1 36 72.2
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 6.3e-07 58.9 98 43.9
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 8.2e-07 58.5 36 69.4
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 5.3e-06 55.8 87 47.1


User provided reference genes

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