Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 0.0e+00 1331.2 692 100.0
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 0.0e+00 1288.1 692 95.8
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 0.0e+00 1160.2 692 86.3
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 0.0e+00 1120.9 692 84.7
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 2.4e-298 1028.5 693 74.7
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 3.3e-295 1018.1 712 72.8
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 4.0e-293 1011.1 693 73.7
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 6.8e-293 1010.4 693 73.6
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 3.2e-290 1001.5 693 72.6
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 6.1e-286 987.3 693 71.1
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 1.2e-284 983.0 693 70.7
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 5.8e-284 980.7 693 72.4
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 8.3e-283 976.9 694 72.5
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 3.2e-282 974.9 692 71.8
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.4e-282 974.2 693 72.3
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 2.0e-281 972.2 694 71.5
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.0e-280 969.9 693 70.1
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.3e-280 969.5 693 72.7
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 3.9e-280 968.0 685 72.4
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 6.6e-280 967.2 693 70.0
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.1e-279 966.5 696 71.1
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 1.5e-279 966.1 693 71.6
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 9.5e-279 963.4 693 72.0
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 1.2e-278 963.0 692 71.1
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.6e-278 962.6 693 70.4
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.6e-278 962.6 691 71.8
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 4.7e-278 961.1 692 71.0
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.3e-277 958.7 693 69.6
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 2.3e-277 958.7 698 71.5
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.2e-276 956.4 693 69.8
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.5e-276 956.1 696 71.0
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 2.6e-276 955.3 698 69.9
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.8e-276 954.1 693 69.8
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.2e-275 952.2 694 70.7
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.2e-275 952.2 695 71.1
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 4.9e-275 951.0 692 69.9
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 2.4e-274 948.7 697 70.6
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 7.1e-274 947.2 693 68.8
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 9.2e-274 946.8 692 69.9
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.1e-273 945.7 696 71.1
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.7e-273 945.3 693 69.4
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 6.0e-273 944.1 719 68.2
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 7.8e-273 943.7 694 70.5
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 2.5e-271 938.7 694 69.3
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 4.0e-269 931.4 645 73.3
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 5.2e-269 931.0 692 68.6
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 4.4e-268 927.9 728 67.4
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 5.8e-268 927.5 691 70.2
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 8.4e-267 923.7 691 69.0
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 6.0e-265 917.5 684 69.2
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 1.0e-264 916.8 685 67.9
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.3e-264 915.6 705 66.7
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 3.0e-264 915.2 694 66.7
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.9e-264 914.8 695 68.2
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.1e-263 913.3 713 66.8
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.9e-263 912.5 694 66.9
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 7.3e-263 910.6 706 66.3
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 1.4e-261 906.4 695 67.2
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.4e-261 906.4 712 66.7
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 8.9e-261 903.7 693 66.4
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 1.2e-260 903.3 686 67.3
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.9e-259 898.7 694 66.1
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 4.9e-259 897.9 686 66.9
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 6.4e-259 897.5 693 67.1
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 1.1e-258 896.7 680 67.4
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 1.1e-258 896.7 678 67.3
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.4e-258 896.3 674 67.8
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 2.4e-258 895.6 689 66.8
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 9.3e-258 893.6 745 64.0
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 9.3e-258 893.6 693 66.5
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 6.0e-257 891.0 684 66.8
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 3.9e-256 888.3 645 69.6
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 5.1e-256 887.9 693 66.2
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.1e-255 886.7 662 68.4
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 1.5e-255 886.3 688 67.7
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 5.6e-255 884.4 809 58.3
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 6.2e-254 880.9 693 65.4
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 8.1e-254 880.6 693 65.7
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.4e-253 879.8 695 65.9
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 3.1e-253 878.6 693 65.4
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.3e-251 873.2 712 63.2
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 3.8e-251 871.7 685 65.4
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.1e-250 870.2 693 64.9
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.9e-250 869.4 687 64.8
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 3.2e-250 868.6 694 65.1
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.1e-249 865.9 693 64.6
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 4.6e-249 864.8 607 72.0
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 1.3e-248 863.2 693 64.5
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.3e-248 863.2 727 62.3
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 6.6e-248 860.9 694 64.3
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.9e-247 859.4 667 66.0
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.1e-246 855.9 693 64.1
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 2.8e-246 855.5 708 63.1
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 4.8e-246 854.7 693 64.1
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.2e-244 850.1 651 67.0
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 9.9e-244 847.0 692 63.7
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.2e-243 845.9 693 63.5
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 1.1e-242 843.6 711 62.6
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 3.5e-241 838.6 709 62.2
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 3.5e-241 838.6 676 63.6
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 4.6e-241 838.2 697 63.4
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 6.0e-241 837.8 693 63.1
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 3.0e-240 835.5 645 65.9
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 8.7e-240 833.9 686 63.6
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 8.1e-238 827.4 693 62.0
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 8.1e-238 827.4 710 62.1
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.1e-237 827.0 686 63.7
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 3.1e-237 825.5 693 61.3
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.3e-235 820.1 800 56.2
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 2.9e-235 818.9 664 63.4
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 5.5e-234 814.7 655 64.0
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.2e-233 813.5 661 64.0
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 2.7e-233 812.4 654 63.6
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 7.9e-233 810.8 655 63.5
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.3e-232 810.1 614 69.4
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.8e-232 809.7 693 60.6
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 5.1e-232 808.1 626 65.7
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.1e-229 798.5 695 62.2
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 2.2e-227 792.7 641 65.5
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 5.0e-227 791.6 645 62.6
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 7.9e-225 784.3 663 62.3
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 8.7e-224 780.8 695 60.0
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 2.5e-223 779.2 663 62.1
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 2.5e-223 779.2 663 62.1
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.8e-221 773.1 688 57.3
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 3.4e-220 768.8 670 61.2
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 4.5e-220 768.5 621 64.1
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 8.5e-219 764.2 687 59.2
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 2.5e-218 762.7 688 56.5
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 1.2e-217 760.4 692 56.6
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 4.3e-215 751.9 694 57.3
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 1.3e-214 750.4 709 56.3
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.6e-209 733.4 736 56.1
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 4.7e-201 705.3 745 53.8
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.5e-194 683.7 432 85.2
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 3.0e-192 676.0 696 54.7
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.2e-192 675.2 652 56.6
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 1.5e-191 673.7 655 54.8
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 2.0e-180 636.7 530 61.5
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 1.2e-175 620.9 550 60.9
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.3e-158 564.3 503 59.0
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.1e-149 531.9 564 54.3
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 1.2e-145 521.2 691 43.1
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.4e-127 459.9 356 65.4
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.5e-114 417.2 425 54.6
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.2e-110 404.1 321 66.0
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.9e-109 401.0 361 56.2
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 1.9e-106 391.0 308 66.6
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 5.9e-103 379.4 560 42.9
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 6.5e-102 375.9 380 56.1
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.1e-96 357.1 327 58.7
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 2.0e-95 354.4 307 58.0
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 4.4e-82 310.1 427 43.3
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.2e-76 292.0 198 80.8
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 8.8e-67 259.2 309 50.2
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 1.2e-66 258.8 692 30.6
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 5.4e-64 250.0 385 41.3
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 5.6e-61 240.0 299 46.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.5e-58 229.6 156 75.6
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.6e-55 220.3 262 49.6
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.7e-54 218.4 658 28.6
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 8.9e-51 206.1 187 58.8
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 3.7e-49 200.7 223 51.6
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 2.1e-39 168.3 199 49.2
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-37 161.8 118 66.1
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 8.4e-33 146.4 96 74.0
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.9e-32 145.2 163 50.3
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 4.6e-31 140.6 135 54.8
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.2e-28 130.2 195 42.6
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.0e-27 126.3 88 69.3
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.2e-26 125.9 79 77.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-26 124.8 80 75.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 4.4e-26 124.0 104 64.4
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 5.3e-19 100.5 67 73.1
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 9.9e-18 96.3 301 30.6
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 6.4e-17 93.6 105 49.5
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.4e-16 92.4 157 41.4
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 7.1e-16 90.1 86 57.0
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-15 89.0 115 41.7
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 2.8e-12 78.2 179 34.1
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-10 72.8 117 40.2
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 3.8e-09 67.8 46 67.4


User provided reference genes

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