Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.7e-234 813.1 422 100.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.5e-181 639.8 381 91.3
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 3.4e-170 602.1 337 94.4
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 8.4e-169 597.4 384 84.6
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.5e-157 559.3 338 88.8
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 4.2e-112 409.1 335 70.7
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 2.7e-111 406.4 342 69.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.4e-110 404.1 340 70.3
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.6e-109 399.8 357 65.8
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.1e-107 394.4 334 69.8
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 7.0e-107 391.7 348 67.2
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-106 389.8 378 61.9
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 2.9e-105 386.3 360 64.7
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 3.8e-105 386.0 352 65.1
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.9e-104 383.6 335 66.9
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 8.0e-103 378.3 424 58.3
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.0e-102 377.9 351 63.2
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.0e-102 376.3 353 63.5
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-100 370.2 359 62.7
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 6.3e-100 368.6 361 62.9
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.1e-99 366.3 346 61.3
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 5.3e-99 365.5 334 64.7
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 9.1e-99 364.8 357 61.9
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.6e-98 364.0 344 64.0
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.5e-98 362.8 339 65.5
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 7.7e-98 361.7 354 62.4
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 3.8e-97 359.4 384 58.1
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.0e-97 359.0 346 60.7
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 5.5e-96 355.5 339 64.3
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 7.2e-96 355.1 346 60.7
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 6.1e-95 352.1 295 68.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.0e-93 347.1 379 57.8
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 5.7e-93 345.5 360 59.7
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 9.8e-93 344.7 334 63.5
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.3e-92 344.4 337 62.0
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.3e-92 344.4 343 62.7
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.2e-92 343.6 347 61.4
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.2e-92 343.6 327 63.0
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.4e-91 340.9 347 61.7
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.8e-91 340.5 337 61.7
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.8e-91 340.5 353 60.6
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.1e-91 339.3 337 61.1
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 3.8e-89 332.8 346 60.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.8e-89 332.8 338 60.4
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.9e-88 330.5 341 59.2
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 5.5e-88 328.9 387 54.5
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 5.5e-88 328.9 326 61.3
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 6.1e-87 325.5 405 53.3
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 8.0e-87 325.1 344 59.6
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.3e-86 323.6 406 53.0
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 3.0e-86 323.2 409 53.5
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 3.0e-86 323.2 371 58.8
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 4.0e-86 322.8 337 61.1
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 8.9e-86 321.6 349 58.5
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.4e-85 319.3 408 54.2
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.7e-85 318.9 322 61.8
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.8e-84 316.6 336 60.1
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.1e-83 314.7 332 61.1
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 9.2e-83 311.6 347 57.1
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 3.5e-82 309.7 333 58.3
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 5.9e-82 308.9 333 58.3
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 7.8e-82 308.5 371 56.9
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 2.3e-81 307.0 336 59.5
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.8e-81 306.2 330 60.0
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 5.0e-81 305.8 340 60.3
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 4.3e-80 302.8 388 52.8
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 6.8e-78 295.4 340 56.8
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 4.4e-77 292.7 304 58.6
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 5.8e-77 292.4 347 54.2
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 4.9e-76 289.3 347 53.3
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.4e-75 287.0 391 49.6
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.4e-75 287.0 290 59.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 9.2e-75 285.0 332 57.5
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 9.2e-75 285.0 333 56.8
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 7.8e-74 282.0 344 56.1
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-73 281.6 300 58.7
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.7e-73 280.8 395 49.1
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 8.6e-73 278.5 335 53.4
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.1e-72 278.1 337 51.9
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.1e-72 278.1 345 53.3
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.5e-72 277.7 257 66.5
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.5e-72 276.9 344 54.1
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 4.3e-72 276.2 313 58.5
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.6e-72 275.8 339 54.6
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 7.3e-72 275.4 344 52.9
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.1e-70 271.6 299 60.5
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.2e-69 268.1 357 51.8
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.2e-69 268.1 343 52.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 5.8e-69 265.8 360 51.9
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.4e-67 261.2 333 51.7
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.4e-67 260.4 334 53.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.2e-67 260.0 345 53.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.6e-66 257.7 352 48.9
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 6.0e-66 255.8 383 49.9
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.3e-65 253.8 360 47.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 3.0e-65 253.4 375 50.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.1e-64 251.5 329 55.9
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.9e-64 250.8 275 58.5
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.9e-64 250.8 275 58.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 4.3e-64 249.6 341 52.8
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 7.3e-64 248.8 341 52.8
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 7.3e-64 248.8 359 47.4
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.1e-63 247.3 338 52.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.1e-63 247.3 338 52.4
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 4.7e-63 246.1 342 52.0
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 8.1e-63 245.4 338 52.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 8.1e-63 245.4 338 52.1
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.1e-62 245.0 337 51.0
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.4e-62 244.6 338 51.5
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 5.2e-62 242.7 344 51.5
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 2.6e-61 240.4 311 52.7
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 7.5e-61 238.8 305 53.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.7e-60 237.7 344 50.6
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.2e-58 231.5 328 49.4
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.1e-58 230.7 338 47.9
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 3.0e-57 226.9 273 53.1
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 9.9e-53 211.8 361 43.8
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.6e-50 204.5 286 48.6
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 3.5e-50 203.4 352 41.5
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.1e-48 198.4 339 45.1
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 2.6e-45 187.2 206 54.4
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 9.3e-43 178.7 227 52.4
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.7e-42 177.2 237 55.3
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 5.1e-41 172.9 282 44.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-39 167.9 203 55.7
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-39 167.9 203 55.7
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.9e-36 156.4 215 52.1
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.2e-34 151.8 189 51.3
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 5.3e-30 136.3 339 38.1
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 6.9e-30 136.0 328 37.5
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.5e-29 134.8 109 67.9
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.5e-29 134.8 341 37.8
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 9.9e-29 132.1 192 50.0
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 2.2e-28 131.0 117 64.1
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 6.4e-28 129.4 117 64.1
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-27 128.3 202 47.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.2e-27 127.1 202 47.0
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-27 126.7 202 47.0
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-26 125.2 202 46.5
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-26 123.6 202 46.0
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-26 123.2 202 46.5
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.6e-24 115.5 103 59.2
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.3e-23 115.2 266 37.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.6e-23 114.8 147 51.7
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.8e-20 103.6 202 42.1
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.5e-19 100.9 115 57.4
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.6e-15 88.2 64 75.0
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 6.9e-14 82.8 160 43.1
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 6.5e-12 76.3 193 33.7
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 1.1e-11 75.5 83 61.4
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.0e-09 68.9 157 40.1
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 2.0e-08 64.7 54 68.5
FvH4_3g16370 Fragaria vesca HOM05D037407 ORTHO05D035386 4.3e-08 63.5 76 51.3
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 5.7e-08 63.2 76 51.3


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