Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 0.0e+00 1260.0 651 100.0
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 0.0e+00 1090.1 564 97.2
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.5e-310 1068.9 594 91.4
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 6.4e-293 1010.4 565 89.7
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 6.5e-253 877.5 568 76.4
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 5.5e-252 874.4 564 78.0
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 8.7e-250 867.1 564 77.3
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.1e-249 866.7 566 76.7
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.3e-248 863.2 566 78.1
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.1e-248 862.4 565 77.2
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.7e-248 861.7 567 75.8
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 4.8e-248 861.3 566 76.3
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 6.3e-248 860.9 565 77.0
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.8e-247 859.4 551 78.2
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 1.8e-247 859.4 563 77.3
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 9.0e-247 857.1 562 76.2
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.2e-246 856.7 572 75.5
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.5e-246 856.3 567 76.5
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 1.7e-245 852.8 555 77.1
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 6.5e-245 850.9 566 75.8
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.4e-244 849.7 569 75.0
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 2.5e-244 849.0 569 74.9
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 3.2e-244 848.6 567 75.5
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 7.2e-244 847.4 567 74.6
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 7.2e-244 847.4 632 69.6
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.2e-244 847.4 555 76.9
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.6e-243 846.3 567 75.0
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.1e-243 845.9 555 76.0
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.7e-243 845.5 555 76.6
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 3.6e-243 845.1 559 77.3
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 7.9e-243 844.0 567 75.1
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.0e-242 843.6 571 74.8
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.8e-242 842.8 556 77.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.3e-242 842.4 563 75.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 8.7e-242 840.5 561 75.6
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.1e-241 840.1 552 76.3
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.5e-241 839.0 552 76.1
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.3e-241 838.2 560 75.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.3e-240 836.6 552 75.9
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 2.8e-240 835.5 560 75.0
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.7e-240 835.1 562 75.4
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.3e-240 834.3 562 75.4
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 6.3e-240 834.3 568 73.9
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.1e-239 833.6 565 74.7
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 3.1e-239 832.0 566 74.6
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 9.1e-239 830.5 584 72.9
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 9.1e-239 830.5 587 72.4
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 9.1e-239 830.5 559 74.8
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.5e-238 829.7 559 75.1
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.0e-238 829.3 566 74.4
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.0e-238 829.3 576 73.4
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 5.9e-238 827.8 559 75.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 2.9e-237 825.5 556 75.7
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.6e-235 819.7 567 73.4
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 2.1e-235 819.3 569 72.1
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.1e-235 819.3 572 72.6
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 2.1e-235 819.3 554 74.7
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 6.1e-235 817.8 554 74.7
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 6.7e-234 814.3 554 74.5
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.1e-233 813.5 551 73.9
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 3.3e-233 812.0 554 74.4
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 5.7e-233 811.2 561 72.9
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.7e-232 809.7 573 71.0
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.7e-232 809.7 554 74.0
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 4.8e-232 808.1 551 73.5
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 6.3e-232 807.7 556 72.7
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 8.2e-232 807.4 561 72.7
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.4e-231 806.6 607 69.5
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 5.3e-231 804.7 551 74.0
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 9.1e-231 803.9 546 74.2
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 9.1e-231 803.9 564 71.1
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 3.4e-230 802.0 543 73.1
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 4.5e-230 801.6 551 73.5
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.5e-230 801.6 565 71.7
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 1.3e-229 800.0 568 71.8
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.2e-229 799.3 561 71.1
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 5.0e-229 798.1 554 72.4
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.1e-228 797.0 555 72.3
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.1e-228 797.0 553 74.0
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.9e-228 796.2 559 71.7
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 2.5e-228 795.8 584 69.9
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.5e-228 795.8 565 71.7
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 2.5e-228 795.8 555 72.6
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.2e-228 795.4 562 73.0
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.6e-227 793.1 571 70.9
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 6.1e-227 791.2 551 72.1
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.3e-226 789.3 555 71.7
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.3e-226 789.3 555 71.7
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.0e-226 788.9 564 70.4
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 3.0e-226 788.9 565 72.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 5.2e-226 788.1 555 71.2
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.5e-225 786.6 555 71.4
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 9.7e-225 783.9 556 72.1
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.8e-224 782.3 574 71.3
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.1e-223 780.4 549 71.9
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 9.1e-223 777.3 561 70.8
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 3.5e-222 775.4 561 70.6
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 7.7e-222 774.2 538 73.0
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.2e-221 772.7 558 70.1
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 8.5e-221 770.8 606 66.3
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.2e-219 766.9 588 67.2
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.5e-217 760.0 550 69.8
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.0e-217 759.6 621 65.7
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 9.7e-217 757.3 525 72.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.1e-215 753.8 536 69.8
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.6e-214 750.0 546 68.1
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.0e-214 749.6 556 69.8
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 6.5e-213 744.6 567 67.2
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 8.5e-213 744.2 551 68.8
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.5e-212 742.7 526 72.1
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.6e-211 740.0 558 67.7
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 6.1e-211 738.0 556 65.8
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 2.3e-210 736.1 555 68.1
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 4.1e-207 725.3 569 65.6
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 5.9e-206 721.5 577 63.1
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 7.2e-204 714.5 626 61.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 7.2e-204 714.5 476 74.6
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.7e-197 693.3 452 77.4
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.2e-192 676.4 504 65.1
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.1e-191 674.1 561 60.1
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 7.0e-191 671.4 566 62.2
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.3e-186 656.4 481 68.2
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.2e-185 654.1 477 69.4
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 5.6e-180 635.2 548 59.9
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.1e-172 610.9 558 58.1
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 7.3e-164 581.6 393 74.3
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.6e-163 580.5 393 73.8
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.8e-162 577.0 393 73.5
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.4e-161 572.4 406 71.7
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 2.8e-155 553.1 359 77.7
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.5e-153 547.4 367 74.4
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 6.0e-142 508.8 549 50.5
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.6e-131 474.2 532 45.7
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 4.1e-122 443.0 338 68.3
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.4e-121 439.9 272 77.9
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-105 387.9 334 61.7
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.5e-97 359.8 220 78.6
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-78 298.5 195 72.3
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.6e-76 290.8 200 75.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 4.9e-59 233.4 199 62.3
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 4.2e-50 203.8 152 65.8
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.0e-48 197.6 141 68.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.1e-45 189.1 147 65.3
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 2.1e-41 174.9 189 51.9
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 3.9e-40 170.6 118 69.5
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.5e-28 130.6 91 76.9
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 4.2e-26 124.0 83 75.9
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.6e-25 122.1 96 63.5
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.3e-22 112.5 92 63.0
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.6e-22 112.1 111 52.3
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 5.3e-21 107.1 89 62.9
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.5e-19 100.1 69 66.7
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.8e-08 65.5 55 56.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 1.5e-07 62.4 108 36.1
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 5.7e-07 60.5 304 24.3


User provided reference genes

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