Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 4.3e-54 214.5 118 100.0
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 4.7e-45 184.5 118 87.3
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 8.9e-44 180.3 115 89.6
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.4e-33 146.4 121 72.7
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 7.1e-33 144.1 120 70.8
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.1e-33 144.1 120 70.8
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 7.1e-33 144.1 121 70.2
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.7e-32 142.1 120 67.5
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.7e-32 142.1 120 70.0
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 4.6e-32 141.4 120 69.2
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 7.8e-32 140.6 120 70.0
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 7.8e-32 140.6 120 67.5
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 69.2
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.7e-31 139.4 120 68.3
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.0e-31 138.7 117 70.1
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.0e-31 138.7 122 67.2
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.1e-30 136.7 115 67.8
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.5e-30 136.3 117 70.9
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.9e-30 136.0 116 65.5
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.9e-30 136.0 120 65.8
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.5e-30 135.6 120 66.7
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 5.6e-30 134.4 112 65.2
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.2e-29 133.3 117 63.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.6e-29 132.9 121 66.1
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 1.6e-29 132.9 118 70.3
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.6e-29 132.9 118 68.6
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 2.1e-29 132.5 122 68.0
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.1e-29 132.5 120 65.8
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 2.8e-29 132.1 119 66.4
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 3.6e-29 131.7 116 69.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 4.7e-29 131.3 118 71.2
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 4.7e-29 131.3 116 62.1
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 6.2e-29 131.0 116 66.4
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 8.1e-29 130.6 116 65.5
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 8.1e-29 130.6 121 66.1
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.1e-28 130.2 118 66.9
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 1.1e-28 130.2 111 69.4
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 1.8e-28 129.4 118 68.6
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.4e-28 129.0 119 67.2
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.1e-28 128.6 117 63.2
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.5e-27 126.3 112 64.3
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.5e-27 126.3 128 60.9
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 3.4e-27 125.2 117 63.2
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.4e-27 125.2 117 63.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 3.4e-27 125.2 115 62.6
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.4e-27 125.2 124 66.9
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 5.8e-27 124.4 118 61.9
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 7.6e-27 124.0 118 63.6
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 7.6e-27 124.0 118 62.7
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 7.6e-27 124.0 123 65.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 7.6e-27 124.0 117 63.2
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 9.9e-27 123.6 118 63.6
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 9.9e-27 123.6 117 62.4
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.3e-26 123.2 121 66.1
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.3e-26 123.2 120 62.5
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.3e-26 123.2 113 64.6
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.3e-26 123.2 117 63.2
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.2e-26 122.5 117 65.0
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 2.2e-26 122.5 117 64.1
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 2.2e-26 122.5 117 64.1
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.9e-26 122.1 113 63.7
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.9e-26 122.1 113 63.7
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 3.8e-26 121.7 120 63.3
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.8e-26 121.7 117 64.1
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 6.4e-26 120.9 118 63.6
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 6.4e-26 120.9 119 65.5
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 6.4e-26 120.9 119 65.5
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 6.4e-26 120.9 118 63.6
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 6.4e-26 120.9 123 61.8
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.1e-25 120.2 117 59.8
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.9e-25 119.4 127 57.5
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.9e-25 119.4 117 62.4
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.4e-25 119.0 116 62.1
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 9.3e-25 117.1 112 60.7
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.2e-24 116.7 117 59.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 4.6e-24 114.8 113 62.8
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 7.8e-24 114.0 122 61.5
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 7.8e-24 114.0 123 61.8
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.7e-23 112.8 120 55.8
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.7e-23 112.8 120 55.8
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.3e-23 112.5 114 58.8
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 2.3e-23 112.5 118 57.6
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 6.6e-23 110.9 114 56.1
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 8.7e-23 110.5 122 59.0
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 57.1
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 57.1
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 57.1
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.1e-22 110.2 102 66.7
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 1.5e-22 109.8 116 58.6
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 1.9e-22 109.4 113 60.2
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.5e-22 109.0 121 58.7
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 2.5e-22 109.0 120 56.7
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 2.5e-22 109.0 100 65.0
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.3e-22 108.6 119 58.8
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 4.3e-22 108.2 116 57.8
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 4.3e-22 108.2 117 58.1
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 7.3e-22 107.5 118 55.1
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.3e-21 106.7 115 55.7
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 1.6e-21 106.3 112 58.0
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 4.8e-21 104.8 118 55.1
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 6.2e-21 104.4 117 56.4
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.4e-20 103.2 113 54.0
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 2.4e-20 102.4 118 54.2
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 2.4e-20 102.4 118 54.2
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 2.4e-20 102.4 118 54.2
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 2.4e-20 102.4 116 56.0
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.4e-20 102.4 119 55.5
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 4.0e-20 101.7 119 55.5
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 4.0e-20 101.7 153 51.0
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 5.3e-20 101.3 126 54.0
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.5e-19 99.8 114 53.5
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.5e-19 99.8 117 53.8
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 5.8e-19 97.8 117 54.7
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 7.6e-19 97.4 117 53.8
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 2.9e-18 95.5 86 64.0
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 3.8e-18 95.1 118 52.5
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 6.4e-18 94.4 118 55.1
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 3.2e-17 92.0 105 55.2
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.2e-16 90.1 123 52.8
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.6e-16 89.7 115 48.7
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.6e-16 89.7 96 57.3
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.0e-15 85.5 105 51.4
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 5.1e-15 84.7 73 65.8
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.1e-15 84.7 87 60.9
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 5.1e-15 84.7 116 53.4
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 3.3e-14 82.0 82 63.4
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.3e-13 80.1 82 62.2
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 2.1e-13 79.3 123 48.8
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 2.8e-13 79.0 124 46.0
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.1e-13 77.4 82 61.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.1e-12 77.0 119 49.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 5.3e-12 74.7 87 54.0
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 9.0e-12 73.9 71 63.4
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 9.0e-12 73.9 71 63.4
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 9.0e-12 73.9 83 49.4
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.5e-11 73.2 55 76.4
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 2.6e-11 72.4 83 57.8
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 5.8e-11 71.2 117 45.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.3e-10 70.1 88 52.3
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.7e-10 69.7 84 59.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 2.9e-10 68.9 76 60.5
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.4e-10 67.8 72 56.9
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 7.1e-09 64.3 195 35.9
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.6e-08 61.6 111 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 8.7e-07 57.4 116 37.9
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 2.5e-06 55.8 36 77.8


User provided reference genes

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