Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G014190 Cucumis sativus L. HOM05D012313 ORTHO05D015614 4.3e-113 411.4 216 100.0
MELO3C035549.2 Cucumis melo HOM05D012313 ORTHO05D015614 2.6e-97 359.0 198 89.4
CsaV3_1G014180 Cucumis sativus L. HOM05D012313 ORTHO05D015614 5.4e-71 271.6 198 64.6
ClCG01G013920 Citrullus lanatus HOM05D012313 ORTHO05D015614 2.0e-62 243.0 195 62.1
MELO3C035547.2 Cucumis melo HOM05D012313 ORTHO05D015614 2.2e-56 223.0 160 68.1
ClCG01G013940 Citrullus lanatus HOM05D012313 ORTHO05D015614 1.2e-49 200.7 191 56.5
ClCG01G013930 Citrullus lanatus HOM05D012313 ORTHO05D015614 8.4e-48 194.5 193 56.5
CsaV3_1G014240 Cucumis sativus L. HOM05D012313 ORTHO05D015614 2.4e-47 193.0 189 55.0
CsaV3_1G014220 Cucumis sativus L. HOM05D012313 ORTHO05D015614 1.5e-44 183.7 192 50.0
MELO3C035550.2 Cucumis melo HOM05D012313 ORTHO05D015614 1.6e-43 180.3 188 51.6
MELO3C035552.2 Cucumis melo HOM05D012313 ORTHO05D015614 4.7e-43 178.7 192 47.9
Sed0021966 Sechium edule HOM05D012313 ORTHO05D015614 6.2e-43 178.3 188 52.1
MELO3C004856.2 Cucumis melo HOM05D012313 ORTHO05D044872 1.6e-35 153.7 145 56.6
CsaV3_1G014210 Cucumis sativus L. HOM05D012313 ORTHO05D044872 3.6e-35 152.5 145 55.2
Ciclev10029305m.g Citrus clementina HOM05D000733 ORTHO05D000649 7.6e-17 91.7 189 31.7
Lj6g0019562 Lotus japonicus HOM05D000733 ORTHO05D000649 2.2e-16 90.1 193 30.1
Rhsim13G0101800 Rhododendron simsii HOM05D000733 ORTHO05D000649 5.5e-15 85.5 205 30.2
Nn2g13881 Nelumbo nucifera HOM05D000733 ORTHO05D000649 7.1e-15 85.1 201 27.4
FAN25G0910 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.2e-14 84.3 161 34.8
CiPaw.14G106700 Carya illinoinensis HOM05D000733 ORTHO05D000649 1.6e-14 84.0 191 31.4
FvH4_3g30480 Fragaria vesca HOM05D000980 ORTHO05D000649 1.6e-14 84.0 160 33.8
FAN11G0534 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.6e-14 84.0 160 33.8
FAN16G0197 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.6e-14 84.0 160 33.8
FAN21G3359 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.6e-14 84.0 160 33.8
QL01p014807 Quercus lobata HOM05D000733 ORTHO05D000649 1.6e-14 84.0 188 28.7
DCAR_015500 Daucus carota HOM05D000980 ORTHO05D000649 2.7e-14 83.2 196 30.1
arahy.Tifrunner.gnm1.ann1.ECG1V9 Arachis hypogaea HOM05D000980 ORTHO05D000649 4.6e-14 82.4 188 28.7
CAN.G546.58 Capsicum annuum HOM05D000733 ORTHO05D000649 1.0e-13 81.3 186 27.4
Phvul.006G194400 Phaseolus vulgaris HOM05D000733 ORTHO05D000649 1.0e-13 81.3 193 27.5
CANSAT64G2923 Cannabis sativa HOM05D000733 ORTHO05D000649 2.3e-13 80.1 188 29.3
RcHm_v2.0_Chr5g0056431 Rosa chinensis HOM05D000980 ORTHO05D000649 2.3e-13 80.1 160 32.5
Hma1.2p1_0051F.1_g029590 Hydrangea macrophylla HOM05D000733 ORTHO05D000649 3.0e-13 79.7 189 28.6
PGSC0003DMG400000476 Solanum tuberosum HOM05D000733 ORTHO05D000649 3.9e-13 79.3 184 28.8
VMungo0540G2319 Vigna mungo HOM05D000733 ORTHO05D000649 3.9e-13 79.3 189 27.0
TAR633G1866 Trochodendron aralioides HOM05D000733 ORTHO05D000649 6.7e-13 78.6 189 29.6
GSVIVG01031450001 Vitis vinifera HOM05D000980 ORTHO05D000649 6.7e-13 78.6 192 26.6
Cfa021147 Carpinus fangiana HOM05D000980 ORTHO05D000649 1.5e-12 77.4 195 29.7
Cc01_g10170 Coffea canephora HOM05D000980 ORTHO05D000649 1.5e-12 77.4 188 31.9
Glyma.13G248600 Glycine max HOM05D000733 ORTHO05D000649 1.5e-12 77.4 205 27.3
Gohir.D09G087700 Gossypium hirsutum HOM05D000733 ORTHO05D000649 2.5e-12 76.6 188 25.0
Cpa.g.sc47.9 Carica papaya HOM05D000733 ORTHO05D000649 3.3e-12 76.3 184 27.7
Gorai.006G104100 Gossypium raimondii HOM05D000980 ORTHO05D000649 4.3e-12 75.9 188 25.0
Atru.chr3.3498 Acer truncatum HOM05D000980 ORTHO05D000649 5.7e-12 75.5 189 27.5
arahy.Tifrunner.gnm1.ann1.2X3X0W Arachis hypogaea HOM05D000980 ORTHO05D000649 5.7e-12 75.5 165 28.5
CSS0035712 Camellia sinensis var. sinensis HOM05D000733 ORTHO05D000649 5.7e-12 75.5 188 24.5
Gohir.A09G087800 Gossypium hirsutum HOM05D000980 ORTHO05D000649 5.7e-12 75.5 188 25.0
TPR.G19617 Trifolium pratense HOM05D000980 ORTHO05D000649 5.7e-12 75.5 193 26.4
ECA233G2410 Erigeron canadensis HOM05D000980 ORTHO05D000649 7.4e-12 75.1 188 26.1
Aqoxy1G01055 Aquilegia oxysepala HOM05D000980 ORTHO05D000649 9.6e-12 74.7 181 26.5
Duzib168G1538 Durio zibethinus HOM05D000733 ORTHO05D000649 1.3e-11 74.3 204 24.5
Sopen11g026240 Solanum pennellii HOM05D000733 ORTHO05D000649 1.3e-11 74.3 184 28.3
EL10Ac9g21008 Beta vulgaris HOM05D000980 ORTHO05D000649 1.6e-11 73.9 191 27.2
Gohir.D05G087600 Gossypium hirsutum HOM05D000733 ORTHO05D000649 1.6e-11 73.9 189 25.9
Gorai.009G089500 Gossypium raimondii HOM05D000733 ORTHO05D000649 1.6e-11 73.9 189 25.9
Manes.04G012200 Manihot esculenta HOM05D000733 ORTHO05D000649 1.6e-11 73.9 170 28.2
Solyc11g066490.1 Solanum lycopersicum HOM05D000733 ORTHO05D000649 1.6e-11 73.9 186 28.0
Haze_23524 Corylus avellana HOM05D000980 ORTHO05D000649 2.1e-11 73.6 168 28.6
Gohir.A05G085600 Gossypium hirsutum HOM05D000733 ORTHO05D000649 2.1e-11 73.6 189 25.4
Sc21g0004210 Simmondsia chinensis HOM05D000733 ORTHO05D000649 2.1e-11 73.6 182 25.8
CDE06G0023 Ceratophyllum demersum HOM05D000733 ORTHO05D000649 2.8e-11 73.2 183 27.9
PSO339G5167 Papaver somniferum HOM05D000733 ORTHO05D000649 2.8e-11 73.2 189 29.1
Psat1g209680 Pisum sativum HOM05D000733 ORTHO05D000649 2.8e-11 73.2 188 26.6
HanXRQChr13g0403571 Helianthus annuus HOM05D000733 ORTHO05D000649 3.7e-11 72.8 187 24.6
Glyma.15G065400 Glycine max HOM05D000733 ORTHO05D000649 4.8e-11 72.4 193 25.4
CSS0043169 Camellia sinensis var. sinensis HOM05D000733 ORTHO05D000649 6.3e-11 72.0 188 23.4
Oeu035520.1 Olea europaea HOM05D000980 ORTHO05D000649 6.3e-11 72.0 189 25.4
Prupe.6G114100 Prunus persica HOM05D000980 ORTHO05D000649 6.3e-11 72.0 166 28.9
PSO339G2761 Papaver somniferum HOM05D000733 ORTHO05D000649 8.2e-11 71.6 185 26.5
Duzib150G0967 Durio zibethinus HOM05D000980 ORTHO05D000649 1.1e-10 71.2 195 25.6
Duzib170G0419 Durio zibethinus HOM05D000980 ORTHO05D000649 1.1e-10 71.2 194 25.8
PSO063G1903 Papaver somniferum HOM05D000733 ORTHO05D000649 1.1e-10 71.2 189 28.6
Sc12g0003700 Simmondsia chinensis HOM05D000733 ORTHO05D000649 1.1e-10 71.2 189 25.4
Manes.11G153200 Manihot esculenta HOM05D000980 ORTHO05D000649 2.4e-10 70.1 160 24.4
Peaxi162Scf00392g00045 Petunia axillaris HOM05D000733 ORTHO05D000649 2.4e-10 70.1 173 28.9
TAR633G0760 Trochodendron aralioides HOM05D000980 ORTHO05D000649 2.4e-10 70.1 181 27.1
Nn6g35187 Nelumbo nucifera HOM05D000733 ORTHO05D000649 3.1e-10 69.7 200 26.0
PSO801G0405 Papaver somniferum HOM05D000733 ORTHO05D000649 3.1e-10 69.7 185 25.4
ClCG01G013910 Citrullus lanatus HOM05D000980 ORTHO05D000649 4.1e-10 69.3 163 27.0
QL01p014798 Quercus lobata HOM05D000980 ORTHO05D000649 5.3e-10 68.9 198 30.8
CsaV3_1G014170 Cucumis sativus L. HOM05D000980 ORTHO05D000649 6.9e-10 68.6 163 27.6
Dinv29388 Davidia involucrata HOM05D000733 ORTHO05D000649 9.0e-10 68.2 176 29.5
TAR369G0482 Trochodendron aralioides HOM05D000980 ORTHO05D000649 1.2e-09 67.8 189 24.9
Duzib168G0761 Durio zibethinus HOM05D000733 ORTHO05D000649 1.5e-09 67.4 182 25.8
MD11G1149600 Malus domestica HOM05D000980 ORTHO05D000649 2.0e-09 67.0 105 38.1
SGA_v2.0_scaffold331G48915 Striga asiatica HOM05D000980 ORTHO05D000649 2.6e-09 66.6 200 29.5
TAR623G0484 Trochodendron aralioides HOM05D008748 ORTHO05D000649 2.6e-09 66.6 187 25.1
Potri.009G003800 Populus trichocarpa HOM05D000980 ORTHO05D000649 3.4e-09 66.2 189 24.9
MSTRG.17755 Avicennia marina HOM05D000980 ORTHO05D000649 4.5e-09 65.9 189 25.9
MELO3C004861.2 Cucumis melo HOM05D000980 ORTHO05D000649 4.5e-09 65.9 81 39.5
Oeu000603.1 Olea europaea HOM05D000980 ORTHO05D000649 5.9e-09 65.5 185 26.5
PGSC0003DMG400024324 Solanum tuberosum HOM05D000980 ORTHO05D000649 7.6e-09 65.1 167 27.5
ATR0043G050 Amborella trichopoda HOM05D000733 ORTHO05D000649 1.0e-08 64.7 163 26.4
Eucgr.J00393 Eucalyptus grandis HOM05D000980 ORTHO05D000649 1.0e-08 64.7 177 29.4
CiPaw.13G144600 Carya illinoinensis HOM05D000733 ORTHO05D000649 1.3e-08 64.3 187 27.8
MD03G1127800 Malus domestica HOM05D000980 ORTHO05D000649 1.7e-08 63.9 164 28.7
TWI31G0681 Tripterygium wilfordii HOM05D000733 ORTHO05D000649 1.7e-08 63.9 203 24.6
CAN.G246.4 Capsicum annuum HOM05D000980 ORTHO05D000649 2.2e-08 63.5 167 28.1
Dinv16242 Davidia involucrata HOM05D001163 ORTHO05D000649 2.2e-08 63.5 134 32.1
PGR119G1497 Punica granatum HOM05D000980 ORTHO05D000649 2.2e-08 63.5 190 27.9
AUR62041321 Chenopodium quinoa HOM05D000980 ORTHO05D000649 2.9e-08 63.2 194 23.7
Ca_00222_v3 Cicer arietinum L. HOM05D001102 ORTHO05D001018 6.5e-08 62.0 169 25.4
QL01p014802 Quercus lobata HOM05D000980 ORTHO05D000649 6.5e-08 62.0 188 29.8
Nitab4.5_0005152g0040 Nicotiana tabacum HOM05D000733 ORTHO05D000649 8.5e-08 61.6 166 28.3
AUR62024021 Chenopodium quinoa HOM05D000980 ORTHO05D000649 1.1e-07 61.2 173 24.9
Lsat_1_v5_gn_1_65060 Lactuca sativa HOM05D000733 ORTHO05D000649 1.1e-07 61.2 190 23.7
Medtr2g011350 Medicago truncatula HOM05D000980 ORTHO05D000649 1.1e-07 61.2 189 24.3
Rhsim01G0210100 Rhododendron simsii HOM05D000980 ORTHO05D000649 1.1e-07 61.2 189 26.5
Sp6g22540 Schrenkiella parvula HOM05D000733 ORTHO05D000649 1.1e-07 61.2 177 26.6
BcaB05g22678 Brassica carinata HOM05D000733 ORTHO05D000649 1.4e-07 60.8 189 25.4
Lsat_1_v5_gn_6_41740 Lactuca sativa HOM05D000733 ORTHO05D000649 1.4e-07 60.8 187 22.5
Ah.01g016000 Amaranthus hybridus HOM05D000733 ORTHO05D000649 1.9e-07 60.5 183 25.1
CARHR190690 Cardamine hirsuta HOM05D000733 ORTHO05D000649 3.2e-07 59.7 195 26.7
SalBow3G1483 Salvia bowleyana HOM05D000980 ORTHO05D000649 4.2e-07 59.3 175 25.1
THA.LOC104800572 Tarenaya hassleriana HOM05D008748 ORTHO05D000649 4.2e-07 59.3 190 24.7
AL6G33990 Arabidopsis lyrata HOM05D000733 ORTHO05D000649 7.2e-07 58.5 190 25.8
C02p11360 Brassica napus HOM05D000733 ORTHO05D000649 7.2e-07 58.5 193 26.4
COL.COLO4_19217 Corchorus olitorius HOM05D000980 ORTHO05D000649 7.2e-07 58.5 154 26.6
Thhalv10015654m.g Eutrema salsugineum HOM05D000733 ORTHO05D000649 7.2e-07 58.5 194 24.7
SEGI_39149 Sequoiadendron giganteum HOM05D000733 ORTHO05D005393 7.2e-07 58.5 186 24.7
BcaC03g13927 Brassica carinata HOM05D000733 ORTHO05D000649 1.2e-06 57.8 193 26.4
BolC2t07209H Brassica oleracea HOM05D000733 ORTHO05D000649 1.2e-06 57.8 193 26.4
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 1.6e-06 57.4 180 21.7
BraA02t05696Z Brassica rapa HOM05D000733 ORTHO05D000649 1.6e-06 57.4 193 25.9
Sed0007603 Sechium edule HOM05D000733 ORTHO05D000649 1.6e-06 57.4 166 25.3
AT5G22870 Arabidopsis thaliana HOM05D000733 ORTHO05D000649 2.1e-06 57.0 194 27.3
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 2.1e-06 57.0 163 22.7
SEGI_30252 Sequoiadendron giganteum HOM05D000733 ORTHO05D002052 2.7e-06 56.6 182 22.0
Mapoly0007s0205 Marchantia polymorpha HOM05D000973 ORTHO05D000652 3.6e-06 56.2 98 33.7
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 3.6e-06 56.2 163 20.2
THA.LOC104810884 Tarenaya hassleriana HOM05D000733 ORTHO05D000649 4.6e-06 55.8 167 26.3
Carub.0006s2061 Capsella rubella HOM05D000733 ORTHO05D000649 7.9e-06 55.1 205 24.4
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 7.9e-06 55.1 156 23.7
TWI38G2287 Tripterygium wilfordii HOM05D004864 ORTHO05D005393 7.9e-06 55.1 165 27.9


User provided reference genes

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