Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.8e-279 965.3 494 100.0
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.7e-269 932.2 494 96.8
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 3.8e-245 851.3 495 89.5
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-241 839.3 478 90.6
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.4e-222 775.0 482 85.9
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 9.3e-220 766.9 487 82.1
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.8e-218 762.7 495 79.4
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 7.8e-158 561.2 501 59.7
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 4.3e-156 555.4 497 58.6
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.2e-155 553.9 496 57.9
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 4.0e-154 548.9 491 59.5
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 4.4e-153 545.4 502 58.0
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.6e-150 537.0 505 56.4
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 2.7e-150 536.2 505 56.4
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.7e-150 536.2 505 56.4
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.7e-150 536.2 506 55.5
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 6.0e-150 535.0 507 56.8
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.0e-149 534.3 505 56.4
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.0e-149 534.3 508 56.9
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 6.6e-149 531.6 499 56.5
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 6.6e-149 531.6 497 56.1
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 8.6e-149 531.2 498 56.6
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 1.1e-148 530.8 513 55.6
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 5.6e-148 528.5 431 63.6
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 9.5e-148 527.7 500 55.6
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 4.7e-147 525.4 476 56.5
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.8e-146 523.5 495 54.5
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 4.4e-145 518.8 503 55.1
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 4.4e-145 518.8 504 55.0
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 9.9e-145 517.7 506 55.1
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.9e-144 516.2 500 55.0
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.9e-144 515.4 499 55.3
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 1.9e-143 513.5 498 55.6
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 2.4e-143 513.1 596 49.0
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 4.1e-143 512.3 499 55.1
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.6e-142 510.4 505 54.1
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 4.6e-142 508.8 498 55.0
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 4.6e-142 508.8 494 55.1
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 6.0e-142 508.4 512 53.7
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.0e-141 507.7 497 54.9
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 5.1e-141 505.4 499 55.3
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.1e-140 504.2 437 58.6
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.1e-140 504.2 511 53.2
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.1e-140 504.2 498 55.0
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 7.3e-140 501.5 499 54.1
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 9.5e-140 501.1 498 54.0
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.6e-139 500.4 494 54.0
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 2.1e-139 500.0 504 54.8
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.1e-138 497.7 511 52.8
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.4e-138 497.3 493 54.2
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 1.8e-138 496.9 505 52.9
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 1.8e-138 496.9 505 52.9
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 2.4e-138 496.5 499 53.9
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.1e-138 496.1 507 54.0
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 5.2e-138 495.4 499 53.9
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 2.6e-137 493.0 496 52.8
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 3.4e-137 492.7 497 53.7
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 4.4e-137 492.3 501 53.9
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.3e-136 490.7 498 53.6
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.7e-136 490.3 495 54.1
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.9e-136 489.6 507 52.1
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 6.4e-136 488.4 507 52.5
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 8.4e-136 488.0 502 53.0
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 1.4e-135 487.3 509 52.7
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 2.4e-135 486.5 436 56.4
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 4.1e-135 485.7 447 57.3
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 9.2e-135 484.6 498 52.0
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 9.2e-135 484.6 507 53.6
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 1.2e-134 484.2 491 53.4
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 1.6e-134 483.8 492 53.5
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.6e-134 483.8 496 52.6
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.1e-134 483.4 499 53.1
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 2.1e-134 483.4 489 53.2
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.0e-133 481.1 505 51.9
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 3.0e-133 479.6 507 52.1
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.1e-132 477.6 477 52.6
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.9e-132 476.9 503 52.1
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.6e-131 473.8 479 52.2
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 2.1e-131 473.4 445 56.2
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 2.4e-130 469.9 468 54.5
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 3.1e-130 469.5 448 54.5
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 5.2e-130 468.8 497 53.5
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 9.0e-130 468.0 439 56.5
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 4.4e-129 465.7 502 51.2
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 5.8e-129 465.3 505 51.9
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.9e-128 462.2 495 49.1
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 6.4e-128 461.8 455 54.1
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.1e-127 461.1 499 51.7
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.4e-127 459.9 436 54.1
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.4e-127 459.9 436 54.8
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 4.2e-127 459.1 421 54.6
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 2.1e-126 456.8 492 51.8
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.7e-125 453.8 456 53.1
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 3.0e-125 453.0 507 51.1
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 3.9e-125 452.6 502 50.4
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 6.6e-125 451.8 456 52.6
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 3.3e-124 449.5 447 52.6
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 1.3e-123 447.6 507 49.7
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.1e-122 444.5 497 48.1
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 1.4e-122 444.1 507 48.1
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 3.1e-122 443.0 501 50.5
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.2e-121 441.0 496 48.4
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 2.0e-121 440.3 505 50.1
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 3.8e-120 436.0 422 53.8
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 4.2e-119 432.6 468 51.3
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 5.4e-119 432.2 466 51.3
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 9.3e-119 431.4 443 51.0
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.1e-116 424.5 430 53.7
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 6.2e-115 418.7 511 45.4
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.4e-114 417.5 497 49.3
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 5.3e-114 415.6 517 47.6
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 3.2e-111 406.4 442 49.8
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 7.4e-108 395.2 426 53.5
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 2.2e-104 383.6 435 50.1
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 3.2e-103 379.8 420 49.3
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 7.1e-103 378.6 322 56.5
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.3e-101 374.4 397 52.1
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 4.2e-95 352.8 386 50.8
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 6.1e-94 349.0 308 55.8
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 2.4e-90 337.0 408 49.5
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 3.4e-89 333.2 494 41.9
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.0e-88 331.6 432 44.2
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 1.1e-87 328.2 331 51.1
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 6.7e-85 318.9 442 43.7
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 7.4e-84 315.5 307 53.4
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 6.3e-83 312.4 393 47.1
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.6e-81 307.0 498 38.2
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 2.6e-76 290.4 417 41.2
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 9.4e-71 271.9 312 48.4
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 3.3e-68 263.5 292 47.6
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 3.3e-68 263.5 206 60.7
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 7.5e-68 262.3 224 53.1
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 7.0e-66 255.8 507 34.3
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 5.2e-61 239.6 316 46.5
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.1e-58 231.9 189 58.7
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 3.3e-55 220.3 254 51.2
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 1.8e-45 188.0 132 63.6
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.6e-44 184.1 192 50.0
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.9e-42 177.9 414 31.9
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.5e-36 158.3 329 31.9
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-25 121.7 122 50.0
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 7.3e-23 112.8 80 56.2
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 9.5e-23 112.5 195 35.4
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 2.8e-22 110.9 70 68.6
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 4.7e-22 110.2 83 60.2
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.3e-15 87.4 126 47.6
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 3.1e-13 80.9 51 66.7
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 4.0e-13 80.5 177 32.2
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 9.0e-13 79.3 59 59.3
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 4.4e-12 77.0 59 57.6
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 4.2e-10 70.5 54 63.0
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 7.8e-09 66.2 392 24.5
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 6.6e-08 63.2 46 58.7


User provided reference genes

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