Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 0.0e+00 1217.2 632 100.0
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 1.9e-310 1068.5 587 95.4
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.2e-301 1039.3 588 93.0
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 5.0e-258 894.4 589 80.5
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 5.2e-215 751.5 580 68.1
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 5.7e-214 748.0 584 67.0
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.4e-212 743.4 598 65.9
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.8e-207 726.5 624 63.0
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 3.7e-205 718.8 581 67.1
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.8e-204 716.5 582 65.8
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.8e-204 716.5 585 65.5
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.3e-202 710.3 584 64.4
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 5.0e-202 708.4 591 65.1
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 2.8e-200 702.6 588 64.3
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 1.8e-199 699.9 585 64.8
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.1e-199 699.1 588 64.1
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 5.2e-199 698.4 580 64.1
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 8.9e-199 697.6 589 64.5
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.0e-198 696.4 588 63.8
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 3.7e-197 692.2 584 63.5
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.0e-194 684.1 585 61.7
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 6.6e-194 681.4 582 62.9
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 2.5e-193 679.5 585 62.2
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 5.6e-193 678.3 579 63.0
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 3.6e-192 675.6 586 63.0
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 8.1e-192 674.5 583 62.1
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.1e-191 672.5 588 62.4
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 2.6e-190 669.5 580 62.8
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.6e-190 669.5 586 61.8
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 7.5e-190 667.9 579 62.0
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.9e-188 663.3 586 62.3
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 1.6e-187 660.2 574 61.3
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.1e-186 655.2 586 62.1
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.9e-185 653.3 577 60.1
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 3.3e-185 652.5 584 61.3
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 9.5e-185 651.0 615 57.4
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 6.2e-184 648.3 592 61.0
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 2.0e-182 643.3 579 61.5
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-181 640.6 582 59.3
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 2.2e-181 639.8 579 60.3
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.8e-181 639.0 583 59.9
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 6.4e-181 638.3 581 61.1
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.9e-180 636.7 590 59.0
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 2.4e-180 636.3 583 59.7
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 2.1e-179 633.3 588 60.0
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 4.6e-179 632.1 604 58.4
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 3.0e-178 629.4 584 61.1
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 5.1e-178 628.6 586 60.1
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 3.3e-177 625.9 589 57.6
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 2.8e-176 622.9 501 66.5
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 2.8e-176 622.9 589 57.2
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 1.4e-175 620.5 585 57.1
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 4.0e-175 619.0 582 59.5
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.6e-174 616.3 574 58.5
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 2.4e-172 609.8 629 53.6
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 3.2e-172 609.4 591 57.7
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 9.3e-172 607.8 591 56.5
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 2.4e-167 593.2 591 56.2
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.9e-164 583.6 585 56.2
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 3.2e-164 582.8 586 56.0
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 9.3e-164 581.3 589 55.5
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 2.7e-163 579.7 594 55.4
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 4.6e-163 578.9 584 55.5
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 1.3e-162 577.4 586 57.2
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.3e-162 576.6 584 55.5
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 4.3e-161 572.4 584 55.1
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.6e-160 570.5 590 54.7
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 8.1e-160 568.2 587 54.3
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.1e-159 567.8 584 55.5
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 4.0e-159 565.8 587 54.7
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 9.0e-159 564.7 505 60.6
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.5e-158 563.9 593 53.5
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 2.6e-158 563.1 586 54.4
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 7.6e-158 561.6 586 54.8
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.1e-156 557.8 388 73.2
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 3.5e-155 552.7 574 54.4
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.8e-154 550.4 564 53.5
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 3.9e-154 549.3 592 54.1
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 8.7e-154 548.1 503 59.6
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 5.6e-153 545.4 615 51.7
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.4e-151 540.8 586 54.8
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.4e-150 536.2 586 53.9
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 4.5e-150 535.8 588 52.2
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.8e-149 532.7 583 52.7
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 3.3e-145 519.6 407 68.3
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 2.8e-144 516.5 507 57.8
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.4e-143 514.2 580 52.6
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 2.1e-139 500.4 585 50.6
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 1.4e-132 477.6 622 47.4
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 8.8e-130 468.4 581 49.7
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 8.2e-128 461.8 580 47.9
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.0e-125 454.9 580 47.2
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 6.5e-117 425.6 513 49.5
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.2e-115 421.4 576 46.5
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 9.8e-105 385.2 570 45.3
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 7.2e-100 369.0 597 41.7
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 1.9e-87 327.8 377 48.0
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 1.3e-85 321.6 626 39.1
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.4e-74 285.0 204 67.6
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 7.5e-73 279.3 176 73.3
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 3.0e-69 267.3 264 51.9
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.2e-63 247.3 310 50.3
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 3.9e-61 240.4 218 58.3
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.4e-41 174.1 103 76.7
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.4e-40 169.5 103 74.8
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 9.3e-39 166.0 122 63.9
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.3e-37 161.4 99 73.7
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.9e-29 134.0 103 61.2
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 5.7e-28 130.2 103 60.2
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 2.2e-24 118.2 206 44.7
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 4.7e-14 84.0 229 28.8
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 4.4e-12 77.4 258 29.5
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.5e-09 68.9 61 55.7
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.7e-06 58.2 64 48.4
SHI06084 Sapria himalayana HOM05D006884 ORTHO05D008604 4.7e-06 57.4 63 55.6


User provided reference genes

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