Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.0e-221 773.1 378 100.0
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 7.7e-206 720.3 366 95.6
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 6.9e-199 697.2 382 88.2
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 3.0e-149 532.3 383 68.7
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 3.0e-149 532.3 384 68.8
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 5.0e-149 531.6 384 68.5
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 7.3e-148 527.7 382 67.5
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 3.6e-147 525.4 373 70.0
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 6.2e-147 524.6 384 68.2
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 6.2e-147 524.6 378 67.2
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.2e-145 520.4 373 67.0
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 2.0e-145 519.6 388 66.0
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 2.6e-145 519.2 369 69.9
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 9.8e-145 517.3 387 67.2
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.3e-144 516.9 382 67.0
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 4.1e-143 511.9 380 65.5
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 1.2e-142 510.4 361 68.7
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.6e-142 510.0 381 65.6
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.0e-142 508.1 361 68.4
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.3e-141 506.9 380 66.1
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.7e-141 506.5 343 70.6
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 5.1e-141 505.0 384 64.1
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 5.1e-141 505.0 384 64.8
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.9e-140 503.1 379 64.9
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 7.3e-140 501.1 365 65.8
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 9.5e-140 500.7 378 66.1
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.1e-139 499.6 380 66.1
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 4.7e-139 498.4 379 64.9
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 4.7e-139 498.4 343 69.4
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 8.1e-139 497.7 353 70.0
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.1e-138 497.3 380 65.8
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.3e-138 496.1 365 66.0
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.3e-138 496.1 368 66.0
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 3.1e-138 495.7 366 65.8
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 3.1e-138 495.7 371 66.3
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 6.8e-138 494.6 369 65.9
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.2e-137 493.8 374 63.1
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.5e-137 493.4 374 63.1
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 1.5e-137 493.4 374 62.6
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 3.4e-137 492.3 374 62.6
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 3.4e-137 492.3 374 62.6
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.4e-137 492.3 372 65.1
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 4.4e-137 491.9 382 64.1
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 9.9e-137 490.7 352 65.6
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.9e-137 490.7 368 65.2
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.3e-136 490.3 361 65.9
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.7e-136 490.0 365 66.6
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 2.2e-136 489.6 367 64.9
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 2.9e-136 489.2 353 66.0
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 2.9e-136 489.2 380 61.1
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.8e-136 488.8 378 64.8
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 6.4e-136 488.0 354 65.5
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 6.4e-136 488.0 368 63.9
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 6.4e-136 488.0 353 67.1
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 3.2e-135 485.7 345 65.8
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.1e-135 484.6 378 63.8
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 2.1e-134 483.0 372 64.0
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.0e-133 480.7 364 63.5
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.7e-133 479.9 388 62.1
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.7e-133 479.9 355 65.1
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 1.7e-133 479.9 384 64.1
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 3.0e-133 479.2 358 67.0
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 6.6e-133 478.0 381 62.7
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.6e-133 477.6 358 66.2
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 8.6e-133 477.6 367 64.0
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 9.6e-132 474.2 385 61.3
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.6e-131 473.4 387 60.5
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.8e-131 472.6 379 62.3
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.1e-130 470.7 368 63.9
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.8e-130 469.9 446 57.0
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 8.9e-130 467.6 373 63.0
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.4e-129 465.3 349 65.3
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 7.6e-129 464.5 339 64.6
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 1.7e-128 463.4 348 62.9
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.7e-128 463.4 373 61.4
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.9e-128 462.6 347 65.1
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 6.4e-128 461.5 350 64.3
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 1.4e-127 460.3 343 63.8
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.4e-127 460.3 365 61.9
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 2.4e-127 459.5 394 60.4
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 4.2e-127 458.8 425 54.6
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 7.1e-127 458.0 387 58.4
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 9.3e-127 457.6 383 59.8
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.6e-126 456.8 367 62.4
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 2.7e-126 456.1 357 62.5
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 6.0e-126 454.9 363 60.9
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 1.0e-125 454.1 347 64.6
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.7e-125 453.4 403 56.8
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 3.0e-125 452.6 381 59.3
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.5e-124 450.3 353 63.2
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.5e-124 449.5 345 63.8
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.3e-124 449.1 348 61.5
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 4.3e-124 448.7 398 58.0
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.8e-123 446.0 381 57.7
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.4e-122 443.7 357 59.7
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 4.0e-122 442.2 361 61.5
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 9.0e-122 441.0 396 58.1
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.8e-121 438.3 389 58.6
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 9.9e-121 437.6 366 59.0
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 1.7e-120 436.8 356 59.6
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.2e-120 436.4 307 67.1
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.4e-119 433.7 370 57.8
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 7.1e-119 431.4 332 64.8
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.0e-118 428.3 378 57.7
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.3e-117 427.2 363 62.3
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 6.7e-117 424.9 389 57.3
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 2.4e-114 416.4 310 67.4
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.4e-113 412.5 403 53.6
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.2e-112 409.8 368 57.9
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 3.8e-112 409.1 367 55.3
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.4e-112 408.3 406 54.2
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.1e-111 404.8 361 56.8
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 3.5e-110 402.5 358 55.6
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 3.5e-110 402.5 307 62.2
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 1.5e-108 397.1 367 55.9
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 2.1e-107 393.3 575 40.5
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 2.8e-107 392.9 436 50.9
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 8.1e-107 391.3 373 55.5
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.3e-106 388.7 375 56.5
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 6.9e-106 388.3 370 53.8
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 7.6e-105 384.8 269 70.3
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.5e-104 381.7 520 43.7
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 8.4e-104 381.3 269 69.1
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 7.9e-102 374.8 366 54.6
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 3.1e-98 362.8 269 65.1
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.6e-97 358.2 354 53.1
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 3.8e-96 355.9 369 48.5
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.1e-94 350.1 307 59.3
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.1e-92 344.4 274 59.5
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 5.3e-90 335.5 261 63.2
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 7.7e-89 331.6 369 48.0
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.3e-88 330.9 360 48.3
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 7.2e-87 325.1 354 52.3
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 7.9e-86 321.6 239 64.4
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 1.1e-84 317.8 236 63.1
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 6.5e-80 302.0 359 46.0
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 2.0e-73 280.4 189 72.0
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 8.2e-67 258.5 349 42.7
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.4e-66 257.7 526 33.8
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 3.1e-66 256.5 288 50.3
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 7.2e-63 245.4 193 61.7
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.4e-63 245.0 350 42.0
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 5.0e-56 222.6 306 40.2
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 4.4e-52 209.5 195 49.7
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 5.6e-47 192.6 266 41.7
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.4e-42 177.2 402 33.6
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 4.4e-36 156.4 325 31.7
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 7.5e-36 155.6 314 31.8
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.3e-35 154.8 122 61.5
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.9e-35 152.9 172 49.4
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 4.1e-26 123.2 98 62.2
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.7e-24 117.9 114 49.1
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 1.2e-20 105.1 81 60.5
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 2.1e-17 94.4 90 52.2
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.3e-16 91.7 63 63.5
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 3.6e-14 83.6 48 79.2
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.2e-09 68.6 135 34.1
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.1e-08 63.2 37 75.7
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 1.1e-07 62.0 47 55.3
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 2.8e-06 57.4 34 76.5


User provided reference genes

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