Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 2.1e-54 215.7 132 100.0
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 1.6e-49 199.5 133 96.2
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 4.6e-49 198.0 132 95.5
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 6.9e-37 157.5 142 76.1
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.2e-28 130.2 126 73.0
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 1.2e-28 130.2 125 74.4
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 2.0e-28 129.4 133 71.4
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 5.0e-27 124.8 119 71.4
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 1.8e-24 116.3 161 58.4
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 2.3e-24 115.9 136 64.7
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 3.9e-24 115.2 121 68.6
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 3.9e-24 115.2 121 71.1
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 5.1e-24 114.8 126 65.9
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 2.6e-23 112.5 122 72.1
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 6.3e-22 107.8 128 66.4
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 6.3e-22 107.8 93 79.6
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 1.4e-21 106.7 122 67.2
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 1.8e-21 106.3 125 68.0
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 6.9e-21 104.4 126 65.1
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 6.9e-21 104.4 126 65.1
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.2e-20 103.6 126 65.1
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 1.5e-20 103.2 98 78.6
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 2.0e-20 102.8 97 77.3
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 2.0e-20 102.8 102 71.6
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.4e-20 102.1 94 75.5
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.4e-20 102.1 94 75.5
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 4.5e-20 101.7 97 80.4
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 2.9e-19 99.0 98 71.4
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 5.0e-19 98.2 135 58.5
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 6.5e-19 97.8 119 64.7
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 1.1e-18 97.1 131 58.8
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 1.1e-18 97.1 107 72.9
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 1.4e-18 96.7 127 60.6
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 1.4e-18 96.7 110 66.4
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 3.2e-18 95.5 97 75.3
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 1.2e-17 93.6 173 49.7
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 3.6e-17 92.0 74 58.1
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 3.6e-17 92.0 117 65.8
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.0e-16 90.5 104 68.3
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 1.4e-16 90.1 129 63.6
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 1.4e-16 90.1 92 77.2
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 6.7e-16 87.8 128 60.9
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 8.8e-16 87.4 132 58.3
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 1.1e-15 87.0 117 65.0
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 1.5e-15 86.7 108 66.7
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 1.5e-15 86.7 110 64.5
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.5e-15 86.7 87 73.6
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 3.3e-15 85.5 138 58.7
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 5.7e-15 84.7 88 75.0
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 7.4e-15 84.3 108 66.7
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 9.7e-15 84.0 128 61.7
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 9.7e-15 84.0 109 64.2
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 9.7e-15 84.0 87 71.3
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 1.7e-14 83.2 124 62.1
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 2.2e-14 82.8 118 61.0
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 6.3e-14 81.3 86 76.7
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 8.2e-14 80.9 87 75.9
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 8.2e-14 80.9 87 75.9
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 1.4e-13 80.1 128 57.0
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 1.4e-13 80.1 128 57.8
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 2.4e-13 79.3 62 59.7
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 7.0e-13 77.8 108 65.7
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 9.1e-13 77.4 105 62.9
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 9.1e-13 77.4 128 55.5
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 1.6e-12 76.6 86 73.3
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 1.6e-12 76.6 87 73.6
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 3.5e-12 75.5 87 73.6
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 3.5e-12 75.5 87 73.6
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 3.5e-12 75.5 96 68.8
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 4.5e-12 75.1 65 56.9
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 4.5e-12 75.1 114 59.6
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 4.5e-12 75.1 130 54.6
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 4.5e-12 75.1 121 57.0
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 5.9e-12 74.7 79 48.1
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.0e-11 73.9 83 73.5
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 1.7e-11 73.2 86 72.1
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 1.7e-11 73.2 128 57.0
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 6.5e-11 71.2 108 61.1
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 8.5e-11 70.9 91 65.9
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 7.2e-10 67.8 119 57.1
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 1.2e-09 67.0 106 61.3
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 1.0e-08 63.9 42 69.0
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 2.3e-08 62.8 40 65.0
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 5.2e-08 61.6 113 55.8
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 5.2e-08 61.6 113 56.6
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 5.2e-08 61.6 56 50.0
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 1.5e-07 60.1 41 61.0
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 2.6e-07 59.3 51 51.0
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 2.6e-07 59.3 41 58.5
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 4.4e-07 58.5 98 61.2
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 9.7e-07 57.4 84 63.1
DCAR_008280 Daucus carota HOM05D002138 ORTHO05D002106 1.3e-06 57.0 60 46.7
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 4.8e-06 55.1 93 34.4
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 6.3e-06 54.7 35 65.7


User provided reference genes

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