Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.0e-98 363.6 217 100.0
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 8.3e-96 354.0 217 95.4
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 9.5e-92 340.5 217 95.4
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 6.0e-70 268.1 176 80.1
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 3.9e-69 265.4 210 70.0
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 5.1e-69 265.0 210 69.0
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 1.9e-68 263.1 176 79.0
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 4.3e-68 261.9 211 67.3
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 3.6e-67 258.8 211 67.8
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 4.7e-67 258.5 177 76.8
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 4.7e-67 258.5 210 67.1
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 1.4e-66 256.9 207 69.1
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.3e-66 256.1 210 67.1
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 5.2e-66 255.0 177 76.8
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.4e-65 252.3 210 65.2
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 9.9e-65 250.8 207 68.6
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 3.8e-64 248.8 177 75.1
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 2.4e-63 246.1 220 64.5
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 3.2e-63 245.7 210 64.3
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 5.4e-63 245.0 177 71.8
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 5.4e-63 245.0 208 62.5
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 5.4e-63 245.0 169 75.7
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 5.4e-63 245.0 177 72.9
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 5.4e-63 245.0 177 72.9
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 7.1e-63 244.6 218 61.9
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 9.2e-63 244.2 177 72.3
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 1.6e-62 243.4 177 74.6
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 3.5e-62 242.3 179 72.6
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 4.6e-62 241.9 211 64.9
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 6.0e-62 241.5 209 63.2
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 6.0e-62 241.5 177 71.8
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 1.3e-61 240.4 211 70.6
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 1.7e-61 240.0 206 65.5
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 3.0e-61 239.2 211 64.5
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 3.9e-61 238.8 210 62.9
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.6e-61 238.0 177 70.1
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 6.6e-61 238.0 210 61.0
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 8.6e-61 237.7 220 61.8
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 4.3e-60 235.3 208 64.4
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 4.3e-60 235.3 176 69.3
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 9.6e-60 234.2 209 61.7
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 1.2e-59 233.8 177 72.3
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 6.2e-59 231.5 177 71.2
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 8.1e-59 231.1 207 58.9
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 8.9e-58 227.6 177 68.4
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.5e-57 226.9 222 58.6
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 1.5e-57 226.9 176 64.8
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 2.0e-57 226.5 176 66.5
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 2.0e-57 226.5 208 61.1
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 2.0e-57 226.5 175 68.0
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 3.4e-57 225.7 167 70.1
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 5.8e-57 224.9 174 69.5
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 5.8e-57 224.9 184 67.9
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 5.8e-57 224.9 173 67.6
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 7.6e-57 224.6 210 58.6
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 8.4e-56 221.1 210 59.5
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 2.4e-55 219.5 210 59.0
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 4.2e-55 218.8 178 65.2
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 7.1e-55 218.0 177 65.5
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 2.7e-54 216.1 202 58.9
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 2.7e-54 216.1 210 58.6
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 3.5e-54 215.7 178 64.6
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 6.0e-54 214.9 178 64.0
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 1.0e-53 214.2 178 62.9
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 1.0e-53 214.2 210 59.0
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.7e-53 213.4 178 65.7
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 2.3e-53 213.0 177 66.1
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 8.7e-53 211.1 177 65.0
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 2.1e-51 206.5 167 71.9
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 8.1e-51 204.5 170 65.9
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 1.1e-50 204.1 145 75.2
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.1e-50 204.1 210 56.7
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.8e-50 203.4 146 73.3
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 6.9e-50 201.4 210 55.7
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 1.3e-48 197.2 252 50.4
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.7e-48 196.8 149 71.1
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.2e-48 196.4 148 70.9
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.1e-47 194.1 210 55.2
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 7.1e-47 191.4 146 70.5
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 3.9e-45 185.7 215 50.7
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 3.9e-45 185.7 177 59.9
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 3.9e-45 185.7 178 59.0
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 8.7e-45 184.5 168 60.7
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 7.4e-44 181.4 150 63.3
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 1.6e-43 180.3 216 49.1
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 2.1e-43 179.9 164 59.1
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 4.8e-43 178.7 177 55.9
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 8.1e-43 177.9 178 56.7
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 1.1e-42 177.6 171 57.9
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 1.8e-42 176.8 173 54.3
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.1e-42 176.0 150 62.0
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 1.2e-41 174.1 153 62.1
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 2.0e-41 173.3 154 61.7
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 9.9e-41 171.0 165 59.4
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 1.1e-39 167.5 146 63.7
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.1e-39 167.5 158 58.9
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.3e-37 160.6 169 49.1
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 3.0e-37 159.5 174 54.6
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 1.4e-34 150.6 211 46.4
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 3.4e-33 146.0 214 46.3
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 5.8e-33 145.2 170 42.9
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 2.2e-32 143.3 210 44.8
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 5.7e-28 128.6 169 48.5
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 9.6e-28 127.9 208 44.7
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 4.8e-27 125.6 176 39.2
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 1.8e-26 123.6 211 44.1
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 4.5e-25 119.0 175 45.1
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 2.2e-24 116.7 101 64.4
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 6.5e-24 115.2 153 41.8
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.6e-19 100.5 142 45.1
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 4.8e-19 99.0 130 50.8
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 3.2e-15 86.3 172 37.8
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 5.5e-15 85.5 95 51.6
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 7.9e-14 81.6 167 37.7
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 7.9e-14 81.6 68 69.1
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.4e-13 80.9 65 63.1
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 3.0e-13 79.7 167 37.1
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 8.8e-13 78.2 65 56.9
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 8.2e-11 71.6 144 37.5
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.4e-10 70.9 85 48.2
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 6.9e-10 68.6 79 51.9
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.9e-08 63.2 92 43.5
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 6.5e-08 62.0 55 60.0
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 1.9e-07 60.5 45 71.1
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 5.5e-07 58.9 71 49.3
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 9.4e-07 58.2 66 47.0
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 9.4e-07 58.2 66 47.0


User provided reference genes

Program Settings