Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 2.5e-256 888.3 441 100.0
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 4.7e-247 857.4 441 96.1
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 5.0e-241 837.4 437 95.0
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 7.8e-234 813.5 441 91.6
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 3.6e-199 698.4 442 77.6
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 6.6e-193 677.6 444 75.5
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 6.2e-191 671.0 443 75.6
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 1.1e-190 670.2 438 74.7
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 6.9e-190 667.5 441 73.9
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 4.5e-189 664.8 436 75.0
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 9.9e-189 663.7 447 73.4
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 1.3e-188 663.3 450 73.6
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.3e-188 663.3 443 73.6
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 2.9e-188 662.1 437 74.6
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 2.9e-188 662.1 438 72.8
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 3.8e-188 661.8 437 75.7
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 8.4e-188 660.6 435 72.6
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 8.4e-188 660.6 435 73.1
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 1.1e-187 660.2 447 72.7
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 1.9e-187 659.4 438 74.4
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.9e-187 659.4 438 72.4
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 2.4e-187 659.1 440 73.6
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 4.2e-187 658.3 436 74.1
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 9.3e-187 657.1 434 74.7
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 4.6e-186 654.8 429 75.3
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 2.3e-185 652.5 435 74.0
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.9e-185 651.7 440 71.6
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 5.1e-185 651.4 437 73.7
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 6.7e-185 651.0 441 73.5
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 6.7e-185 651.0 438 74.4
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 8.7e-185 650.6 441 73.5
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 5.6e-184 647.9 460 70.7
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 6.2e-183 644.4 446 71.5
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 1.4e-182 643.3 432 72.0
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.4e-182 643.3 432 74.1
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 2.4e-182 642.5 438 73.3
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 3.1e-182 642.1 423 73.3
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 4.0e-182 641.7 450 71.3
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 1.5e-181 639.8 442 70.6
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 7.6e-181 637.5 438 73.1
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 1.7e-180 636.3 444 70.5
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 1.7e-180 636.3 438 71.9
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 2.2e-180 636.0 436 71.8
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 8.4e-180 634.0 436 73.2
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 8.4e-180 634.0 438 71.5
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.1e-179 633.6 443 72.0
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 1.9e-179 632.9 429 72.5
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 7.1e-179 630.9 438 70.8
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 9.3e-179 630.6 447 69.8
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 1.6e-178 629.8 445 69.0
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 2.7e-178 629.0 450 69.6
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 3.9e-177 625.2 441 70.7
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 8.7e-177 624.0 443 69.3
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.3e-176 621.7 438 69.2
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 1.3e-175 620.2 445 68.1
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.8e-175 619.0 448 67.6
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 3.7e-175 618.6 436 69.5
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 4.8e-175 618.2 445 69.7
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 4.8e-175 618.2 465 67.1
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.2e-173 613.6 431 69.6
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 2.0e-173 612.8 439 67.7
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 1.0e-172 610.5 437 70.7
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 1.1e-171 607.1 430 70.2
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 1.1e-168 597.0 444 67.1
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 1.5e-168 596.7 440 67.7
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 3.3e-168 595.5 442 66.7
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 4.3e-168 595.1 433 67.4
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 3.7e-167 592.0 446 65.2
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 4.8e-167 591.7 444 66.0
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 1.1e-166 590.5 440 68.2
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.8e-166 589.7 448 67.2
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 4.1e-166 588.6 442 66.5
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 9.0e-166 587.4 440 66.6
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 3.4e-165 585.5 438 66.7
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 1.3e-164 583.6 446 66.1
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 2.9e-164 582.4 447 65.5
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.4e-163 580.1 424 67.7
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.4e-163 580.1 424 67.7
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 1.9e-163 579.7 432 67.6
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 4.2e-163 578.6 424 67.5
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 4.2e-163 578.6 424 67.5
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.8e-161 573.2 442 64.7
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 2.3e-161 572.8 443 65.7
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 5.7e-160 568.2 500 59.8
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.3e-159 567.0 434 67.1
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.5e-157 560.1 434 63.8
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.0e-156 557.4 450 65.3
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 7.2e-155 551.2 369 72.1
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 9.4e-155 550.8 443 62.8
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 2.3e-153 546.2 434 63.8
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 1.4e-150 537.0 443 61.9
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.8e-150 536.6 442 62.7
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.8e-150 536.6 443 61.9
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 2.0e-149 533.1 387 69.0
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 4.2e-147 525.4 343 74.3
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 1.6e-146 523.5 436 62.8
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.7e-146 522.7 346 74.6
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 8.2e-143 511.1 345 72.8
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 8.2e-143 511.1 444 59.9
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 1.9e-139 500.0 441 59.0
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 5.3e-134 481.9 438 58.2
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 2.1e-130 469.9 382 62.8
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 5.7e-128 461.8 443 53.0
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 1.3e-127 460.7 447 55.7
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.2e-127 459.9 361 65.4
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 1.6e-125 453.8 423 53.9
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 2.1e-122 443.4 609 44.0
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 5.2e-121 438.7 290 73.8
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 2.6e-120 436.4 445 50.8
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 2.6e-120 436.4 425 52.9
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 4.4e-120 435.6 322 66.1
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.2e-88 331.3 315 53.3
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 5.8e-88 328.9 452 42.3
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.9e-87 325.9 203 78.8
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 6.2e-82 308.9 276 60.1
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 4.8e-74 282.7 329 47.1
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 4.9e-71 272.7 217 59.9
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 3.8e-47 193.4 488 30.7
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.1e-46 191.8 163 58.3
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-36 157.1 200 44.0
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 1.1e-33 148.7 120 59.2
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 5.3e-33 146.4 102 63.7
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 6.3e-18 96.3 91 57.1
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 8.3e-18 95.9 114 37.7
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 1.2e-16 92.0 63 65.1
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 4.5e-16 90.1 100 41.0
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 5.2e-12 76.6 125 36.8
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 5.7e-11 73.2 65 53.8
Cfa022434 Carpinus fangiana HOM05D006332 ORTHO05D121602 1.2e-08 65.5 298 26.5
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 1.2e-08 65.5 41 78.0
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.5e-06 55.8 63 50.8


User provided reference genes

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