Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 5.6e-145 517.7 280 100.0
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 5.4e-116 421.4 283 81.6
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 3.8e-85 318.9 236 74.6
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 9.1e-55 218.0 236 59.3
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 2.5e-44 183.3 326 42.9
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 9.2e-39 164.9 295 43.1
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 3.5e-38 162.9 287 44.3
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 3.3e-36 156.4 310 43.9
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 3.3e-36 156.4 283 44.2
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 3.3e-36 156.4 246 48.0
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 1.2e-35 154.5 246 47.6
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.8e-34 150.6 287 41.8
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 2.3e-34 150.2 266 44.7
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.3e-34 150.2 302 41.7
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.3e-34 150.2 302 41.7
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.2e-33 147.9 291 43.3
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.5e-33 147.5 269 41.3
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 3.4e-33 146.4 318 37.4
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 9.8e-33 144.8 328 37.5
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.9e-32 142.5 314 38.2
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.1e-31 141.4 327 37.0
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 1.1e-31 141.4 307 40.1
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 4.1e-31 139.4 287 41.8
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 5.4e-31 139.0 320 38.4
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 9.2e-31 138.3 311 39.5
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.2e-30 137.9 283 41.3
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.6e-30 137.5 294 40.5
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 1.0e-29 134.8 329 35.9
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.0e-29 134.8 336 35.4
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 1.3e-29 134.4 323 37.2
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.0e-29 133.3 275 42.9
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 3.9e-29 132.9 306 36.9
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 3.9e-29 132.9 306 36.9
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.1e-29 132.5 284 42.3
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.1e-29 132.5 321 37.7
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 5.1e-29 132.5 251 40.2
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.1e-28 131.3 335 39.4
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 7.3e-28 128.6 271 37.6
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 7.3e-28 128.6 276 42.4
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.3e-28 128.6 276 42.8
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 9.5e-28 128.3 227 45.8
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 9.5e-28 128.3 317 36.9
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 6.2e-27 125.6 261 39.8
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 8.1e-27 125.2 317 36.9
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.3e-26 123.6 317 36.6
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 2.3e-26 123.6 307 40.4
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.2e-25 121.3 241 40.7
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.6e-25 120.2 345 33.6
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 4.4e-25 119.4 311 37.0
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 2.2e-24 117.1 246 41.1
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 4.9e-24 115.9 311 37.0
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 6.4e-24 115.5 292 38.4
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.4e-23 114.4 306 37.3
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.9e-23 114.0 294 37.8
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 1.9e-23 114.0 330 35.2
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 7.1e-23 112.1 339 34.2
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.2e-22 111.3 309 36.2
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.7e-22 110.2 283 39.2
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 4.6e-22 109.4 332 35.2
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 1.0e-21 108.2 312 35.3
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.7e-21 107.5 304 36.8
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 2.3e-21 107.1 297 40.1
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 1.9e-20 104.0 297 37.0
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.9e-20 104.0 299 34.4
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 2.5e-20 103.6 262 39.3
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 3.3e-20 103.2 321 35.2
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 6.2e-19 99.0 280 37.1
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 8.1e-19 98.6 205 42.0
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.4e-18 97.8 255 39.2
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.8e-18 97.4 277 39.0
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 2.4e-18 97.1 290 37.6
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.0e-18 96.3 306 34.3
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.0e-18 96.3 306 34.3
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 5.2e-18 95.9 255 38.4
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 5.2e-18 95.9 313 36.1
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 6.8e-18 95.5 308 36.4
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 6.8e-18 95.5 335 33.1
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.2e-17 94.7 250 34.8
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 1.5e-17 94.4 227 39.2
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 2.0e-17 94.0 259 37.1
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 4.4e-17 92.8 348 35.1
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 7.6e-17 92.0 202 36.6
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 9.9e-17 91.7 314 33.4
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.9e-16 90.1 293 35.5
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 4.9e-16 89.4 263 35.7
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 6.4e-16 89.0 280 31.1
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 6.4e-16 89.0 179 38.0
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 1.9e-15 87.4 248 36.3
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.9e-15 87.4 275 34.5
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 4.2e-15 86.3 264 35.6
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.1e-15 85.5 283 33.6
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.1e-15 85.5 283 33.6
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 9.3e-15 85.1 237 35.9
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.6e-14 84.3 287 33.4
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 3.5e-14 83.2 258 31.8
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 3.5e-14 83.2 263 36.1
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 4.6e-14 82.8 290 35.2
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 7.8e-14 82.0 262 37.0
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 1.0e-13 81.6 307 34.5
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.0e-13 81.6 287 33.4
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 1.3e-13 81.3 249 36.1
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.3e-13 80.5 293 33.1
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 2.3e-13 80.5 250 34.8
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 3.9e-13 79.7 286 32.5
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 1.1e-12 78.2 258 34.1
MELO3C002567.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.5e-12 77.8 62 66.1
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 2.5e-12 77.0 263 36.5
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 2.5e-12 77.0 199 36.7
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 3.3e-12 76.6 281 34.2
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 4.3e-12 76.3 290 34.1
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 5.6e-12 75.9 316 34.8
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 7.3e-12 75.5 260 36.2
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 7.3e-12 75.5 260 36.2
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 7.3e-12 75.5 260 36.2
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 9.6e-12 75.1 260 36.2
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 1.3e-11 74.7 326 31.3
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.3e-11 74.7 286 33.9
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 1.3e-11 74.7 237 33.3
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 1.6e-11 74.3 255 34.1
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 2.1e-11 73.9 318 28.6
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 2.1e-11 73.9 322 31.4
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 3.6e-11 73.2 270 33.3
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 4.8e-11 72.8 261 35.2
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 4.8e-11 72.8 317 33.4
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 6.2e-11 72.4 320 31.6
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 8.1e-11 72.0 294 30.6
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 8.1e-11 72.0 273 33.0
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 1.1e-10 71.6 263 33.1
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 2.4e-10 70.5 278 31.3
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 3.1e-10 70.1 245 35.5
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 3.1e-10 70.1 303 30.0
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 5.3e-10 69.3 321 31.8
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 5.3e-10 69.3 258 33.7
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 9.0e-10 68.6 321 29.6
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.2e-09 68.2 304 29.9
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 1.2e-09 68.2 264 33.3
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 2.0e-09 67.4 260 36.2
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 2.0e-09 67.4 260 36.2
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 2.6e-09 67.0 269 34.2
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 2.6e-09 67.0 269 34.2
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 2.6e-09 67.0 269 34.2
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 2.6e-09 67.0 295 30.8
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 3.4e-09 66.6 260 34.2
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 4.4e-09 66.2 288 30.9
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 4.4e-09 66.2 292 32.2
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 5.8e-09 65.9 210 34.8
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 5.8e-09 65.9 256 32.0
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 7.6e-09 65.5 213 35.2
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.3e-08 64.7 294 31.6
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 1.7e-08 64.3 213 34.7
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 1.7e-08 64.3 251 32.7
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.7e-08 64.3 287 32.1
Glyma.07G192300 Glycine max HOM05D004441 ORTHO05D003109 1.7e-08 64.3 300 30.7
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.9e-08 63.5 262 31.3
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 6.4e-08 62.4 260 31.5
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 8.4e-08 62.0 263 31.6
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.1e-07 61.6 210 34.3
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.1e-07 61.6 241 33.6
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 1.4e-07 61.2 279 32.3
CDE02G3343 Ceratophyllum demersum HOM05D004441 ORTHO05D003109 1.4e-07 61.2 223 34.1
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 1.4e-07 61.2 203 36.5
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 1.4e-07 61.2 299 29.4
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 3.2e-07 60.1 296 28.4
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 7.1e-07 58.9 262 30.9
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 9.3e-07 58.5 268 31.0
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 1.2e-06 58.2 217 32.7
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 1.2e-06 58.2 300 30.3
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 2.1e-06 57.4 214 35.0
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 2.1e-06 57.4 281 30.6
Nn2g13357 Nelumbo nucifera HOM05D004441 ORTHO05D003109 2.1e-06 57.4 57 47.4
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.1e-06 57.4 286 29.0
arahy.Tifrunner.gnm1.ann1.R48FJM Arachis hypogaea HOM05D004441 ORTHO05D003109 2.7e-06 57.0 87 47.1
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 6.0e-06 55.8 266 30.1
CDE05G3194 Ceratophyllum demersum HOM05D058240 ORTHO05D003109 7.9e-06 55.5 203 32.5
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 7.9e-06 55.5 289 30.4
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 7.9e-06 55.5 279 30.5


User provided reference genes

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