Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G011440 Cucumis sativus L. HOM05D000067 ORTHO05D001807 4.3e-86 321.2 158 100.0
MELO3C002520.2 Cucumis melo HOM05D000067 ORTHO05D001807 5.9e-67 257.7 159 84.9
ClCG03G005240 Citrullus lanatus HOM05D000067 ORTHO05D001807 1.1e-54 216.9 157 72.6
CsaV3_1G011420 Cucumis sativus L. HOM05D000067 ORTHO05D001807 3.3e-17 92.4 140 47.9
MELO3C002517.2 Cucumis melo HOM05D000067 ORTHO05D001807 9.5e-17 90.9 82 62.2
ClCG03G005230 Citrullus lanatus HOM05D000067 ORTHO05D001807 1.5e-14 83.6 96 52.1
ClCG03G005200 Citrullus lanatus HOM05D000067 ORTHO05D001807 7.8e-11 71.2 89 42.7
Sed0011923 Sechium edule HOM05D000067 ORTHO05D001807 1.3e-10 70.5 85 54.1
Ciclev10004558m.g Citrus clementina HOM05D000067 ORTHO05D001807 1.9e-09 66.6 82 47.6
CsaV3_1G011400 Cucumis sativus L. HOM05D000067 ORTHO05D001807 4.3e-09 65.5 80 47.5
RcHm_v2.0_Chr5g0004801 Rosa chinensis HOM05D000067 ORTHO05D001807 7.3e-09 64.7 81 40.7
Ciclev10014632m.g Citrus clementina HOM05D000067 ORTHO05D001807 1.6e-08 63.5 167 32.3
Duzib235G0134 Durio zibethinus HOM05D000067 ORTHO05D001807 1.6e-08 63.5 89 46.1
Haze_06660 Corylus avellana HOM05D000067 ORTHO05D001807 2.8e-08 62.8 81 44.4
Manes.16G016100 Manihot esculenta HOM05D000067 ORTHO05D001807 2.8e-08 62.8 87 40.2
RcHm_v2.0_Chr5g0004731 Rosa chinensis HOM05D000067 ORTHO05D001807 3.6e-08 62.4 81 39.5
RcHm_v2.0_Chr5g0004761 Rosa chinensis HOM05D000067 ORTHO05D001807 3.6e-08 62.4 81 42.0
Prupe.4G030400 Prunus persica HOM05D000067 ORTHO05D001807 4.7e-08 62.0 112 35.7
MELO3C035526.2 Cucumis melo HOM05D000067 ORTHO05D001807 6.2e-08 61.6 77 46.8
Thecc.06G207000 Theobroma cacao HOM05D000067 ORTHO05D001807 6.2e-08 61.6 89 42.7
GSVIVG01006465001 Vitis vinifera HOM05D000067 ORTHO05D001807 6.2e-08 61.6 81 44.4
CiPaw.09G153200 Carya illinoinensis HOM05D000067 ORTHO05D001807 8.1e-08 61.2 117 41.9
Duzib192G1015 Durio zibethinus HOM05D000067 ORTHO05D001807 8.1e-08 61.2 89 40.4
GSVIVG01005218001 Vitis vinifera HOM05D000067 ORTHO05D001807 8.1e-08 61.2 81 44.4
GSVIVG01005221001 Vitis vinifera HOM05D000067 ORTHO05D001807 8.1e-08 61.2 81 44.4
GSVIVG01006589001 Vitis vinifera HOM05D000067 ORTHO05D001807 8.1e-08 61.2 81 44.4
GSVIVG01006591001 Vitis vinifera HOM05D000067 ORTHO05D001807 8.1e-08 61.2 81 44.4
CiPaw.09G153100 Carya illinoinensis HOM05D000067 ORTHO05D001807 1.1e-07 60.8 117 41.9
GSVIVG01005220001 Vitis vinifera HOM05D000067 ORTHO05D001807 1.1e-07 60.8 81 44.4
GSVIVG01005268001 Vitis vinifera HOM05D000067 ORTHO05D001807 1.1e-07 60.8 81 44.4
Cfa000281 Carpinus fangiana HOM05D000067 ORTHO05D001807 1.8e-07 60.1 81 44.4
CiPaw.09G153400 Carya illinoinensis HOM05D000067 ORTHO05D001807 1.8e-07 60.1 116 41.4
Sed0027412 Sechium edule HOM05D000067 ORTHO05D000097 1.8e-07 60.1 104 39.4
QL05p078196 Quercus lobata HOM05D000067 ORTHO05D001807 2.3e-07 59.7 90 44.4
CiPaw.09G152900 Carya illinoinensis HOM05D000067 ORTHO05D001807 4.0e-07 58.9 93 44.1
CiPaw.09G153300 Carya illinoinensis HOM05D000067 ORTHO05D001807 5.2e-07 58.5 90 43.3
CiPaw.09G153500 Carya illinoinensis HOM05D000067 ORTHO05D001807 5.2e-07 58.5 93 41.9
CsaV3_1G011410 Cucumis sativus L. HOM05D000067 ORTHO05D001807 5.2e-07 58.5 76 44.7
FvH4_3g03061 Fragaria vesca HOM05D000067 ORTHO05D001807 5.2e-07 58.5 83 37.3
FAN25G2201 Fragaria x ananassa HOM05D000067 ORTHO05D001807 5.2e-07 58.5 83 38.6
Thecc.06G206600 Theobroma cacao HOM05D000067 ORTHO05D001807 5.2e-07 58.5 89 41.6
DCAR_024753 Daucus carota HOM05D000067 ORTHO05D001807 6.8e-07 58.2 60 55.0
MD05G1335100 Malus domestica HOM05D000067 ORTHO05D001807 6.8e-07 58.2 104 37.5
Sed0008638 Sechium edule HOM05D000067 ORTHO05D000097 6.8e-07 58.2 104 38.5
GSVIVG01005272001 Vitis vinifera HOM05D000067 ORTHO05D001807 6.8e-07 58.2 87 42.5
GSVIVG01006469001 Vitis vinifera HOM05D000067 ORTHO05D001807 6.8e-07 58.2 81 42.0
FvH4_3g03042 Fragaria vesca HOM05D000067 ORTHO05D001807 8.9e-07 57.8 157 30.6
FvH4_3g03072 Fragaria vesca HOM05D000067 ORTHO05D001807 8.9e-07 57.8 157 30.6
Gohir.A10G017500 Gossypium hirsutum HOM05D000067 ORTHO05D001807 8.9e-07 57.8 94 42.6
Prupe.4G197900 Prunus persica HOM05D000067 ORTHO05D000097 8.9e-07 57.8 97 38.1
QL05p077679 Quercus lobata HOM05D000067 ORTHO05D001807 8.9e-07 57.8 90 42.2
Thecc.06G206700 Theobroma cacao HOM05D000067 ORTHO05D001807 8.9e-07 57.8 89 39.3
Manes.17G030610 Manihot esculenta HOM05D000067 ORTHO05D001807 1.2e-06 57.4 80 38.8
Sed0003991 Sechium edule HOM05D000067 ORTHO05D001807 1.2e-06 57.4 62 50.0
Sed0007829 Sechium edule HOM05D000067 ORTHO05D001807 1.2e-06 57.4 62 50.0
TAR627G1062 Trochodendron aralioides HOM05D000067 ORTHO05D001807 1.2e-06 57.4 90 44.4
Manes.16G016200 Manihot esculenta HOM05D000067 ORTHO05D001807 1.5e-06 57.0 94 37.2
RcHm_v2.0_Chr7g0210371 Rosa chinensis HOM05D000067 ORTHO05D000097 1.5e-06 57.0 62 48.4
Sed0006807 Sechium edule HOM05D000067 ORTHO05D000280 2.0e-06 56.6 78 43.6
DCAR_024752 Daucus carota HOM05D000067 ORTHO05D001807 2.6e-06 56.2 60 55.0
Gohir.D10G017650 Gossypium hirsutum HOM05D000067 ORTHO05D001807 2.6e-06 56.2 83 43.4
CAN.G997.12 Capsicum annuum HOM05D000067 ORTHO05D000097 3.4e-06 55.8 97 39.2
AUR62006347 Chenopodium quinoa HOM05D000067 ORTHO05D000097 3.4e-06 55.8 88 36.4
Dinv17856 Davidia involucrata HOM05D000067 ORTHO05D001807 3.4e-06 55.8 87 40.2
Ah.08g209740 Amaranthus hybridus HOM05D000067 ORTHO05D000097 4.4e-06 55.5 90 36.7
Cpa.g.c34924 Carica papaya HOM05D000067 ORTHO05D000097 4.4e-06 55.5 64 51.6
FAN21G1501 Fragaria x ananassa HOM05D000067 ORTHO05D001807 4.4e-06 55.5 82 37.8
Glyma.07G187600 Glycine max HOM05D000067 ORTHO05D001807 4.4e-06 55.5 84 40.5
Manes.16G016300 Manihot esculenta HOM05D000067 ORTHO05D001807 4.4e-06 55.5 87 36.8
Prupe.4G198200 Prunus persica HOM05D000067 ORTHO05D000097 4.4e-06 55.5 79 39.2
Sed0025437 Sechium edule HOM05D000067 ORTHO05D001807 4.4e-06 55.5 61 47.5
CiPaw.07G072900 Carya illinoinensis HOM05D000067 ORTHO05D001807 5.8e-06 55.1 93 40.9
CiPaw.07G073000 Carya illinoinensis HOM05D000067 ORTHO05D001807 5.8e-06 55.1 93 40.9
CiPaw.09G153600 Carya illinoinensis HOM05D000067 ORTHO05D001807 5.8e-06 55.1 111 40.5
FvH4_3g03081 Fragaria vesca HOM05D000067 ORTHO05D001807 5.8e-06 55.1 83 36.1
Gohir.D10G017700 Gossypium hirsutum HOM05D000067 ORTHO05D001807 5.8e-06 55.1 93 39.8
Gorai.011G019700 Gossypium raimondii HOM05D000067 ORTHO05D001807 5.8e-06 55.1 93 39.8
MD10G1310500 Malus domestica HOM05D000067 ORTHO05D001807 5.8e-06 55.1 64 46.9
Nn1g03683 Nelumbo nucifera HOM05D000067 ORTHO05D000097 5.8e-06 55.1 93 37.6
RcHm_v2.0_Chr5g0038021 Rosa chinensis HOM05D000067 ORTHO05D000097 5.8e-06 55.1 103 35.9
TWI38G0514 Tripterygium wilfordii HOM05D000067 ORTHO05D001807 5.8e-06 55.1 82 41.5
Haze_06659 Corylus avellana HOM05D000067 ORTHO05D001807 7.6e-06 54.7 80 43.8
FAN15G0397 Fragaria x ananassa HOM05D000067 ORTHO05D000097 7.6e-06 54.7 81 44.4
FAN15G1630 Fragaria x ananassa HOM05D000067 ORTHO05D000097 7.6e-06 54.7 81 44.4
MD10G1309700 Malus domestica HOM05D000067 ORTHO05D001807 7.6e-06 54.7 64 46.9
RcHm_v2.0_Chr6g0305391 Rosa chinensis HOM05D000067 ORTHO05D000097 7.6e-06 54.7 80 40.0
TAR627G0794 Trochodendron aralioides HOM05D000067 ORTHO05D001807 7.6e-06 54.7 109 35.8
Atru.chr2.3109_Atru.chr2.3098 Acer truncatum HOM05D000067 ORTHO05D000097 9.9e-06 54.3 75 44.0
Atru.chr2.3138 Acer truncatum HOM05D000067 ORTHO05D000097 9.9e-06 54.3 73 43.8
FAN21G0031 Fragaria x ananassa HOM05D000067 ORTHO05D001807 9.9e-06 54.3 83 36.1
Lj2A275T39 Lonicera japonica HOM05D000067 ORTHO05D000280 9.9e-06 54.3 91 40.7
MBI18_g31692_MAGBIO Magnolia biondii HOM05D000067 ORTHO05D000097 9.9e-06 54.3 101 39.6
Medtr4g092020 Medicago truncatula HOM05D000067 ORTHO05D001807 9.9e-06 54.3 161 32.9
QL05p077442 Quercus lobata HOM05D000067 ORTHO05D001807 9.9e-06 54.3 83 42.2
QL05p077515 Quercus lobata HOM05D000067 ORTHO05D001807 9.9e-06 54.3 79 44.3
SGA_v2.0_scaffold7G03897 Striga asiatica HOM05D000067 ORTHO05D000280 9.9e-06 54.3 77 41.6


User provided reference genes

Program Settings