Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 0.0e+00 1209.5 616 100.0
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 0.0e+00 1118.2 617 93.5
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 0.0e+00 1099.3 617 91.7
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 1.1e-278 963.0 620 81.8
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 2.7e-184 649.4 634 59.8
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 1.1e-180 637.5 630 58.4
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 9.3e-169 597.8 633 55.9
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 2.3e-167 593.2 663 53.5
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 2.5e-166 589.7 632 55.1
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 9.7e-166 587.8 636 55.0
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 2.8e-165 586.3 628 54.8
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 1.3e-162 577.4 634 54.9
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 1.2e-160 570.9 690 52.2
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.6e-160 570.5 632 54.0
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 5.1e-159 565.5 637 53.4
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 6.7e-159 565.1 658 53.3
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 5.7e-158 562.0 637 52.6
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 7.4e-158 561.6 632 53.8
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 7.4e-158 561.6 632 53.8
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 3.7e-157 559.3 646 52.3
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 5.3e-156 555.4 636 52.7
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 6.9e-156 555.1 643 52.9
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 9.1e-156 554.7 643 52.4
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 7.7e-155 551.6 646 52.0
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 2.2e-154 550.1 640 52.2
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 1.1e-153 547.7 639 51.6
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 2.1e-152 543.5 630 51.7
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.9e-151 539.3 636 51.9
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 8.8e-151 538.1 643 52.6
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 4.4e-150 535.8 631 52.6
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 9.7e-150 534.6 633 52.3
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 2.4e-148 530.0 636 52.2
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 1.5e-145 520.8 632 51.7
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 9.4e-145 518.1 634 50.6
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 1.8e-143 513.8 643 50.2
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 1.5e-142 510.8 641 51.3
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 2.0e-142 510.4 639 51.3
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 9.7e-142 508.1 639 51.3
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 2.4e-140 503.4 639 50.2
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 3.1e-140 503.1 648 50.0
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 5.5e-137 492.3 651 49.0
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.0e-135 488.0 652 48.3
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 1.1e-132 478.0 649 47.9
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.8e-132 477.2 658 47.6
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 1.8e-132 477.2 651 48.2
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 9.1e-132 474.9 639 47.9
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 5.9e-131 472.2 632 48.9
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 2.9e-130 469.9 659 47.8
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 1.5e-129 467.6 651 47.2
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 5.5e-129 465.7 652 47.2
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 7.2e-129 465.3 654 46.2
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 1.4e-127 461.1 642 47.0
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 3.1e-124 449.9 658 46.5
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 3.8e-122 443.0 636 46.1
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 6.6e-122 442.2 644 46.7
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 7.3e-121 438.7 440 56.8
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 3.0e-119 433.3 629 46.3
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 6.4e-117 425.6 496 52.2
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 6.6e-114 415.6 643 46.2
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 6.6e-114 415.6 671 44.6
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 1.5e-113 414.5 639 45.5
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 5.6e-113 412.5 651 44.5
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.6e-112 411.0 649 44.8
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 2.1e-112 410.6 715 43.2
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 3.1e-111 406.8 545 47.5
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 7.5e-110 402.1 625 46.2
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.3e-109 401.4 646 44.4
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 3.7e-109 399.8 653 44.0
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 1.1e-108 398.3 650 43.5
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 1.9e-108 397.5 643 45.9
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 1.9e-108 397.5 647 44.4
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 5.4e-108 396.0 643 45.3
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 5.4e-108 396.0 648 44.8
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 9.2e-108 395.2 627 43.4
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.6e-107 394.4 593 46.7
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 2.0e-107 394.0 675 42.8
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 4.6e-107 392.9 631 43.6
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 2.5e-105 387.1 657 43.1
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 4.3e-105 386.3 638 44.0
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 3.6e-104 383.3 631 43.7
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 3.6e-104 383.3 540 47.4
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 5.2e-103 379.4 471 50.1
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 3.5e-99 366.7 678 41.4
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 6.0e-99 365.9 610 43.8
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 6.0e-99 365.9 648 43.4
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 1.0e-98 365.2 635 43.6
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 1.7e-98 364.4 443 51.0
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 7.6e-94 349.0 633 43.1
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.4e-92 344.0 539 43.6
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 9.2e-92 342.0 657 40.3
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 2.8e-88 330.5 593 43.8
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 1.5e-86 324.7 642 41.0
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.4e-86 323.6 653 39.5
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 4.4e-86 323.2 514 43.6
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 7.6e-86 322.4 493 44.0
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.9e-84 317.8 630 40.6
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.1e-83 314.3 636 39.6
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 3.0e-82 310.5 625 39.8
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 3.9e-82 310.1 628 39.8
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.5e-81 308.1 480 43.1
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 1.3e-80 305.1 636 39.5
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 2.8e-80 303.9 634 40.2
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 4.8e-80 303.1 625 39.8
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 8.1e-80 302.4 652 39.0
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.1e-79 302.0 632 40.2
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 1.4e-79 301.6 629 38.8
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 1.4e-79 301.6 709 36.8
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 5.3e-79 299.7 634 39.9
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 1.4e-76 291.6 618 39.6
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 4.2e-76 290.0 447 43.0
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 2.1e-75 287.7 633 40.0
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 1.0e-74 285.4 633 38.7
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 1.0e-74 285.4 762 34.8
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 2.5e-73 280.8 694 36.5
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 2.4e-71 274.2 619 36.7
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 2.1e-67 261.2 660 38.5
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 7.4e-65 252.7 439 41.9
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 1.3e-64 251.9 358 46.6
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 3.2e-60 237.3 464 39.2
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 1.6e-56 224.9 433 37.9
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 2.7e-51 207.6 650 32.9
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 3.0e-50 204.1 726 34.3
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 1.7e-48 198.4 129 74.4
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 3.7e-48 197.2 164 65.2
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 1.1e-47 195.7 610 32.5
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 1.3e-45 188.7 660 33.5
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 1.6e-43 181.8 251 47.0
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 1.7e-37 161.8 191 52.9
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 1.6e-30 138.7 711 28.8
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 4.8e-24 117.1 436 30.3
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 5.3e-23 113.6 180 41.7
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 3.0e-18 97.8 142 43.7
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 5.7e-17 93.6 108 49.1
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 2.2e-16 91.7 976 23.9
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 5.9e-14 83.6 101 45.5
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.1e-12 79.3 85 60.0
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 1.2e-11 75.9 192 37.0
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 3.6e-11 74.3 147 38.1
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 1.1e-07 62.8 245 31.4


User provided reference genes

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