Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.7e-67 259.2 133 100.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 9.1e-53 210.3 111 94.6
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.7e-41 172.2 110 80.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 6.7e-40 167.5 115 75.7
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 2.2e-22 109.4 114 57.0
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.4e-21 105.9 108 50.0
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 3.1e-21 105.5 110 49.1
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 4.1e-21 105.1 110 50.9
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.6e-20 103.2 114 46.5
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 2.0e-20 102.8 110 51.8
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.5e-20 102.1 109 48.6
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.5e-20 102.1 115 47.0
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.0e-19 100.5 114 45.6
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.7e-19 99.8 113 49.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.8e-19 98.6 107 49.5
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 6.6e-19 97.8 111 46.8
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.1e-18 97.1 113 47.8
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.5e-18 96.7 107 48.6
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.9e-18 96.3 113 45.1
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.9e-18 96.3 113 50.4
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.5e-18 95.9 113 45.1
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.5e-18 95.9 113 45.1
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 3.3e-18 95.5 113 45.1
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.3e-18 95.5 112 42.9
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 4.2e-18 95.1 114 44.7
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 5.5e-18 94.7 114 46.5
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 7.2e-18 94.4 110 47.3
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.5e-18 94.0 110 45.5
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.6e-17 93.2 116 47.4
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.6e-17 93.2 109 48.6
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.1e-17 92.8 111 44.1
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 3.6e-17 92.0 116 47.4
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 3.6e-17 92.0 114 48.2
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 3.6e-17 92.0 111 45.0
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 4.7e-17 91.7 114 43.9
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.0e-16 90.5 113 43.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 2.3e-16 89.4 120 44.2
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.0e-16 89.0 113 45.1
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 3.0e-16 89.0 107 44.9
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.0e-16 88.6 114 44.7
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 6.8e-16 87.8 111 44.1
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 6.8e-16 87.8 110 49.1
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.0e-15 86.3 109 45.0
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.6e-15 85.9 111 42.3
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 5.7e-15 84.7 111 42.3
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 1.3e-14 83.6 111 43.2
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.7e-14 83.2 106 42.5
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.7e-14 83.2 112 45.5
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.7e-14 82.0 111 41.4
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.7e-14 82.0 104 43.3
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 3.7e-14 82.0 117 41.0
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 6.3e-14 81.3 118 43.2
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 8.3e-14 80.9 110 41.8
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 4.1e-13 78.6 109 45.9
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 9.2e-13 77.4 122 40.2
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-12 77.0 114 43.0
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.2e-12 77.0 110 43.6
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 2.0e-12 76.3 122 38.5
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.0e-11 73.9 107 45.8
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 3.9e-11 72.0 107 42.1
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-10 70.5 106 39.6
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.5e-10 70.1 105 42.9
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.9e-10 69.7 107 41.1
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 1.9e-10 69.7 108 37.0
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 2.5e-10 69.3 96 47.9
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 2.5e-10 69.3 108 42.6
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.3e-10 68.9 92 43.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 4.3e-10 68.6 108 37.0
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 7.3e-10 67.8 107 42.1
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 7.3e-10 67.8 108 42.6
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.2e-09 67.0 109 35.8
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.6e-09 65.5 112 42.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 4.7e-09 65.1 113 39.8
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 8.0e-09 64.3 107 35.5
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 8.0e-09 64.3 120 37.5
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.0e-08 63.9 108 37.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.0e-08 63.9 108 37.0
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.4e-08 63.5 105 39.0
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 2.3e-08 62.8 116 37.9
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.2e-08 61.6 113 37.2
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 5.2e-08 61.6 131 38.2
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 5.2e-08 61.6 109 36.7
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 6.8e-08 61.2 109 38.5
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 6.8e-08 61.2 111 34.2
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 6.8e-08 61.2 107 38.3
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 6.8e-08 61.2 107 39.3
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 8.9e-08 60.8 108 37.0
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 8.9e-08 60.8 108 37.0
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 1.2e-07 60.5 110 37.3
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.2e-07 60.5 113 37.2
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.2e-07 60.5 111 40.5
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-07 60.1 113 36.3
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 1.5e-07 60.1 110 40.9
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 2.0e-07 59.7 109 38.5
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 2.0e-07 59.7 117 35.9
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 4.4e-07 58.5 97 37.1
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 4.4e-07 58.5 113 37.2
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.8e-07 58.2 106 35.8
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 5.8e-07 58.2 107 41.1
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 5.8e-07 58.2 107 39.3
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.8e-07 58.2 131 34.4
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.5e-07 57.8 106 35.8
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.3e-06 57.0 109 35.8
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.7e-06 56.6 131 32.1
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 1.7e-06 56.6 111 36.0
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 2.2e-06 56.2 108 37.0
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 2.2e-06 56.2 111 32.4
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 2.2e-06 56.2 109 33.0
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 3.7e-06 55.5 117 35.0
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 3.7e-06 55.5 117 35.0
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 3.7e-06 55.5 117 35.0
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.7e-06 55.5 95 41.1
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.7e-06 55.5 105 33.3
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 4.9e-06 55.1 117 36.8
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.9e-06 55.1 105 33.3
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 6.4e-06 54.7 71 43.7
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 8.3e-06 54.3 111 35.1


User provided reference genes

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