Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G009660 Cucumis sativus L. HOM05D006563 ORTHO05D008154 2.0e-129 465.7 227 100.0
MELO3C002362.2 Cucumis melo HOM05D006563 ORTHO05D008154 1.0e-125 453.4 227 97.4
ClCG03G003770 Citrullus lanatus HOM05D006563 ORTHO05D008154 2.4e-122 442.2 227 94.7
Sed0017169 Sechium edule HOM05D006563 ORTHO05D008154 6.4e-107 391.0 230 85.2
Dinv23146 Davidia involucrata HOM05D006563 ORTHO05D008154 2.5e-103 379.0 223 81.2
MD14G1156900 Malus domestica HOM05D006563 ORTHO05D008154 2.5e-103 379.0 225 80.9
Prupe.5G150900 Prunus persica HOM05D006563 ORTHO05D008154 5.2e-101 371.3 225 79.6
Ciclev10032657m.g Citrus clementina HOM05D006563 ORTHO05D008154 5.8e-100 367.9 228 81.6
Manes.06G119700 Manihot esculenta HOM05D006563 ORTHO05D008154 9.9e-100 367.1 226 79.6
TAR374G0821 Trochodendron aralioides HOM05D006563 ORTHO05D008154 9.9e-100 367.1 223 78.5
FAN18G2834 Fragaria x ananassa HOM05D006563 ORTHO05D008154 1.3e-99 366.7 225 77.8
FAN04G0682 Fragaria x ananassa HOM05D006563 ORTHO05D008154 2.2e-99 365.9 225 77.3
Atru.chr6.1794 Acer truncatum HOM05D006563 ORTHO05D008154 6.4e-99 364.4 225 78.2
FvH4_5g08340 Fragaria vesca HOM05D006563 ORTHO05D008154 6.4e-99 364.4 225 77.3
Cpa.g.sc13.115 Carica papaya HOM05D006563 ORTHO05D008154 8.4e-99 364.0 226 79.2
GSVIVG01008544001 Vitis vinifera HOM05D006563 ORTHO05D008154 1.9e-98 362.8 228 78.9
FAN04G3009 Fragaria x ananassa HOM05D006563 ORTHO05D008154 5.4e-98 361.3 225 76.4
FAN13G1867 Fragaria x ananassa HOM05D006563 ORTHO05D008154 5.4e-98 361.3 225 76.4
Duzib205G1898 Durio zibethinus HOM05D006563 ORTHO05D008154 9.3e-98 360.5 225 77.3
CANSAT80G0303 Cannabis sativa HOM05D006563 ORTHO05D008154 1.6e-97 359.8 227 77.5
COL.COLO4_28130 Corchorus olitorius HOM05D006563 ORTHO05D008154 6.0e-97 357.8 225 79.1
Hma1.2p1_0426F.1_g150610 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 6.0e-97 357.8 225 78.2
Potri.015G096400 Populus trichocarpa HOM05D006563 ORTHO05D008154 6.0e-97 357.8 230 78.3
CSS0042372 Camellia sinensis var. sinensis HOM05D006563 ORTHO05D008154 1.0e-96 357.1 224 76.8
RcHm_v2.0_Chr7g0190121 Rosa chinensis HOM05D006563 ORTHO05D008154 1.0e-96 357.1 225 75.6
Nitab4.5_0003282g0060 Nicotiana tabacum HOM05D006563 ORTHO05D008154 3.0e-96 355.5 223 78.0
Peaxi162Scf00089g00627 Petunia axillaris HOM05D006563 ORTHO05D008154 3.9e-96 355.1 225 78.2
TWI39G0919 Tripterygium wilfordii HOM05D006563 ORTHO05D008154 5.1e-96 354.8 223 78.0
Thecc.03G129300 Theobroma cacao HOM05D006563 ORTHO05D008154 1.5e-95 353.2 225 77.3
Thhalv10010696m.g Eutrema salsugineum HOM05D006563 ORTHO05D008154 1.9e-95 352.8 225 78.2
AL5G27990 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 3.3e-95 352.1 225 78.2
Carub.0005s1473 Capsella rubella HOM05D006563 ORTHO05D008154 3.3e-95 352.1 224 78.1
Nitab4.5_0004750g0020 Nicotiana tabacum HOM05D006563 ORTHO05D008154 7.3e-95 350.9 226 77.0
Gorai.008G206400 Gossypium raimondii HOM05D006563 ORTHO05D008154 9.6e-95 350.5 222 78.4
Gohir.D12G192100 Gossypium hirsutum HOM05D006563 ORTHO05D008154 1.3e-94 350.1 222 77.9
AT3G48540 Arabidopsis thaliana HOM05D006563 ORTHO05D008154 1.6e-94 349.7 225 77.8
CAN.G352.13 Capsicum annuum HOM05D006563 ORTHO05D008154 2.1e-94 349.4 226 77.0
Lj4g0002806 Lotus japonicus HOM05D006563 ORTHO05D008154 2.8e-94 349.0 224 75.0
Sp5g13440 Schrenkiella parvula HOM05D006563 ORTHO05D008154 3.6e-94 348.6 222 77.5
Gohir.A12G189700 Gossypium hirsutum HOM05D006563 ORTHO05D008154 6.2e-94 347.8 222 77.5
Medtr4g103300 Medicago truncatula HOM05D006563 ORTHO05D008154 6.2e-94 347.8 231 72.7
Ca_26101_v3 Cicer arietinum L. HOM05D006563 ORTHO05D008154 8.1e-94 347.4 223 74.4
CARHR157340 Cardamine hirsuta HOM05D006563 ORTHO05D008154 1.1e-93 347.1 224 77.2
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 1.4e-93 346.7 223 76.2
A01p25680 Brassica napus HOM05D006563 ORTHO05D008154 1.8e-93 346.3 222 77.0
BraA01t02447Z Brassica rapa HOM05D006563 ORTHO05D008154 1.8e-93 346.3 222 77.0
QL10p002894 Quercus lobata HOM05D006563 ORTHO05D008154 1.8e-93 346.3 250 70.4
Sc04g0000640 Simmondsia chinensis HOM05D006563 ORTHO05D008154 1.8e-93 346.3 224 74.6
BcaB05g23009 Brassica carinata HOM05D006563 ORTHO05D008154 2.4e-93 345.9 222 77.0
BcaC09g49875 Brassica carinata HOM05D006563 ORTHO05D008154 2.4e-93 345.9 222 76.6
C01p32250 Brassica napus HOM05D006563 ORTHO05D008154 2.4e-93 345.9 222 76.6
PGSC0003DMG400015182 Solanum tuberosum HOM05D006563 ORTHO05D008154 2.4e-93 345.9 225 76.4
Aa31LG4G17160 Aethionema arabicum HOM05D006563 ORTHO05D008154 4.0e-93 345.1 228 74.6
Phvul.003G211300 Phaseolus vulgaris HOM05D006563 ORTHO05D008154 4.0e-93 345.1 223 75.3
Solyc03g111350.3 Solanum lycopersicum HOM05D006563 ORTHO05D008154 5.3e-93 344.7 225 76.4
BolC1t03129H Brassica oleracea HOM05D006563 ORTHO05D008154 1.5e-92 343.2 222 76.1
SalBow6G4201 Salvia bowleyana HOM05D006563 ORTHO05D008154 2.0e-92 342.8 221 74.2
SalBow6G4357 Salvia bowleyana HOM05D006563 ORTHO05D008154 2.0e-92 342.8 221 74.2
Sopen03g030480 Solanum pennellii HOM05D006563 ORTHO05D008154 2.6e-92 342.4 226 76.1
Aqoxy5G03376 Aquilegia oxysepala HOM05D006563 ORTHO05D008154 7.6e-92 340.9 234 71.4
Actinidia08872 Actinidia chinensis HOM05D006563 ORTHO05D008154 9.9e-92 340.5 224 74.6
SGA_v2.0_scaffold7G04149 Striga asiatica HOM05D006563 ORTHO05D008154 3.8e-91 338.6 226 73.5
Nn4g22315 Nelumbo nucifera HOM05D006563 ORTHO05D008154 4.9e-91 338.2 209 76.6
Oeu036009.4 Olea europaea HOM05D006563 ORTHO05D008154 6.4e-91 337.8 224 74.1
Eucgr.B00111 Eucalyptus grandis HOM05D006563 ORTHO05D008154 1.1e-90 337.0 236 70.8
MBI07_g16949_MAGBIO Magnolia biondii HOM05D006563 ORTHO05D008154 1.4e-90 336.7 223 73.5
Hund02442 Selenicereus undatus HOM05D006563 ORTHO05D008154 1.4e-90 336.7 224 74.6
HanXRQChr13g0408701 Helianthus annuus HOM05D006563 ORTHO05D008154 2.4e-90 335.9 223 73.1
HPP92_025255 Vanilla planifolia HOM05D006563 ORTHO05D008154 1.2e-89 333.6 226 73.0
Migut.D01965 Erythranthe guttata HOM05D006563 ORTHO05D008154 2.1e-89 332.8 224 72.8
Cc09_g04000 Coffea canephora HOM05D006563 ORTHO05D008154 6.0e-89 331.3 244 68.4
Rhsim12G0174600 Rhododendron simsii HOM05D006563 ORTHO05D008154 7.8e-89 330.9 238 71.8
CiPaw.11G007100 Carya illinoinensis HOM05D006563 ORTHO05D008154 1.7e-88 329.7 224 72.8
FAN08G2924 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.9e-88 328.6 246 66.3
Glyma.05G048400 Glycine max HOM05D006563 ORTHO05D008154 1.1e-87 327.0 207 77.8
Lsat_1_v5_gn_1_28920 Lactuca sativa HOM05D006563 ORTHO05D008154 3.3e-87 325.5 221 70.6
AUR62029612 Chenopodium quinoa HOM05D006563 ORTHO05D008154 7.3e-87 324.3 207 77.3
Os01g0765000 Oryza sativa ssp. japonica HOM05D006563 ORTHO05D008154 7.3e-87 324.3 232 70.7
Sabra15G0117200 Salix brachista HOM05D006563 ORTHO05D008154 9.6e-87 323.9 218 73.4
PSO017G5417 Papaver somniferum HOM05D006563 ORTHO05D008154 2.1e-86 322.8 228 71.1
Oeu040847.2 Olea europaea HOM05D006563 ORTHO05D008154 4.8e-86 321.6 259 64.5
MSTRG.9682 Avicennia marina HOM05D006563 ORTHO05D008154 6.2e-86 321.2 223 70.0
EL10Ac5g11412 Beta vulgaris HOM05D006563 ORTHO05D008154 6.9e-85 317.8 211 74.9
CDE05G1358 Ceratophyllum demersum HOM05D006563 ORTHO05D008154 6.9e-85 317.8 207 73.4
PGR044G0473 Punica granatum HOM05D006563 ORTHO05D008154 3.8e-83 312.0 225 71.1
AUR62034825 Chenopodium quinoa HOM05D006563 ORTHO05D008154 1.4e-82 310.1 206 73.8
ATR0561G278 Amborella trichopoda HOM05D006563 ORTHO05D008154 2.4e-82 309.3 208 71.6
unitig_46.g18474 Utricularia gibba HOM05D006563 ORTHO05D008154 1.6e-81 306.6 228 67.5
arahy.Tifrunner.gnm1.ann1.G9M8TR Arachis hypogaea HOM05D006563 ORTHO05D008154 1.3e-80 303.5 221 67.9
PSO478G0702 Papaver somniferum HOM05D006563 ORTHO05D008154 6.7e-80 301.2 212 72.2
arahy.Tifrunner.gnm1.ann1.76974R Arachis hypogaea HOM05D006563 ORTHO05D008154 1.5e-79 300.1 234 65.8
SEGI_38890 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 2.1e-78 296.2 239 64.0
Haze_07139 Corylus avellana HOM05D006563 ORTHO05D008154 1.4e-77 293.5 207 72.0
Potri.012G097800 Populus trichocarpa HOM05D006563 ORTHO05D008154 1.4e-77 293.5 226 67.7
TPR.G19207 Trifolium pratense HOM05D006563 ORTHO05D008154 5.5e-74 281.6 152 86.2
Pp3c2_32260 Physcomitrium patens HOM05D006563 ORTHO05D008154 9.6e-71 270.8 174 69.5
DCAR_016389 Daucus carota HOM05D006563 ORTHO05D008154 2.8e-70 269.2 235 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2386 Anthoceros agrestis HOM05D006563 ORTHO05D008154 3.7e-70 268.9 175 71.4
Medtr4g057655 Medicago truncatula HOM05D006563 ORTHO05D008154 3.7e-70 268.9 225 61.3
VMungo1215G3263 Vigna mungo HOM05D006563 ORTHO05D008154 4.8e-70 268.5 174 74.7
Sc04g0000170 Simmondsia chinensis HOM05D006563 ORTHO05D008154 8.4e-67 257.7 206 65.5
Medtr4g071665 Medicago truncatula HOM05D006563 ORTHO05D008154 1.2e-65 253.8 225 59.1
Zm00001eb370270 Zea mays HOM05D006563 ORTHO05D008154 2.3e-64 249.6 227 58.1
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 3.3e-63 245.7 336 45.5
SMO116G0330 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.4e-61 239.6 147 76.2
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 3.8e-59 232.3 224 55.4
Lalb_Chr13g0297241 Lupinus albus HOM05D006563 ORTHO05D008154 6.5e-59 231.5 154 72.1
PRCOL_00002657 Prasinoderma coloniale HOM05D006563 ORTHO05D008154 7.2e-58 228.0 193 55.4
Cc09_g03990 Coffea canephora HOM05D006563 ORTHO05D008154 2.7e-57 226.1 123 84.6
Lj5A96G46 Lonicera japonica HOM05D006563 ORTHO05D008154 2.7e-57 226.1 145 78.6
MCO04G397 Micromonas commoda HOM05D006563 ORTHO05D008154 2.5e-50 203.0 131 66.4
Cre19.g750897 Chlamydomonas reinhardtii HOM05D006563 ORTHO05D008154 2.0e-44 183.3 181 51.9
CBR_g19095 Chara braunii HOM05D006563 ORTHO05D008154 2.6e-39 166.4 134 58.2
Haze_26466 Corylus avellana HOM05D006563 ORTHO05D008154 3.1e-37 159.5 154 50.0
AL1G65740 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 5.9e-28 128.6 63 92.1
SMO199G0092 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 1.5e-26 124.0 86 66.3
SMO361G0344 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 1.4e-24 117.5 63 79.4
Hma1.2p1_0426F.1_g150600 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 8.8e-24 114.8 89 65.2
Hma1.2p1_0426F.1_g150620 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.2e-23 114.4 68 83.8
MD06G1141700 Malus domestica HOM05D006563 ORTHO05D008154 1.1e-21 107.8 144 43.8
SEGI_22016 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 1.3e-19 100.9 118 50.0
Lalb_Chr14g0365481 Lupinus albus HOM05D006563 ORTHO05D239264 9.8e-07 58.2 43 62.8


User provided reference genes

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