Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 1.6e-146 522.7 259 100.0
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.1e-139 500.0 264 95.8
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 7.3e-123 444.1 257 88.3
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.1e-110 403.7 261 80.8
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 2.8e-98 362.5 244 75.0
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 9.3e-86 320.9 273 65.9
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 6.6e-84 314.7 231 71.0
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 3.3e-83 312.4 227 71.4
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 1.1e-81 307.4 256 67.6
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 5.4e-78 295.0 227 67.8
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 9.3e-78 294.3 231 65.4
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 1.6e-77 293.5 253 60.9
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 2.7e-77 292.7 222 68.5
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 2.7e-77 292.7 222 68.5
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.0e-76 290.8 260 60.4
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.0e-76 290.8 260 60.4
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 3.9e-76 288.9 232 63.8
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 5.1e-76 288.5 233 64.4
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 6.7e-76 288.1 262 61.1
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 6.7e-76 288.1 263 63.9
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 8.7e-76 287.7 257 60.7
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 1.1e-75 287.3 257 61.1
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.5e-75 287.0 245 62.0
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 2.5e-75 286.2 232 63.4
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 9.6e-75 284.3 263 61.6
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 1.6e-74 283.5 259 59.5
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 3.7e-74 282.3 264 60.2
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 1.1e-73 280.8 254 59.8
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 1.4e-73 280.4 274 56.6
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 3.1e-73 279.3 228 62.3
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.4e-72 275.8 264 58.0
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.3e-71 273.9 227 62.6
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 2.9e-71 272.7 263 58.6
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 3.8e-71 272.3 264 56.8
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 4.2e-70 268.9 244 59.4
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 5.5e-70 268.5 263 57.4
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 7.1e-70 268.1 248 56.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 6.0e-69 265.0 281 54.4
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 3.3e-67 259.2 255 56.1
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 9.6e-67 257.7 214 65.9
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 1.6e-66 256.9 180 72.2
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 3.7e-66 255.8 274 54.4
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 3.7e-66 255.8 214 65.4
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 1.7e-63 246.9 254 54.7
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.2e-63 246.5 212 60.8
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 8.4e-63 244.6 261 52.9
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 3.2e-62 242.7 243 55.6
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 2.7e-61 239.6 247 55.9
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.5e-61 239.2 262 53.1
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.5e-61 239.2 262 53.1
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 3.5e-61 239.2 262 53.1
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 1.0e-60 237.7 182 64.8
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 1.0e-60 237.7 182 64.8
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 2.3e-60 236.5 232 59.5
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 3.9e-60 235.7 257 53.3
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 3.9e-60 235.7 258 50.0
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 6.7e-60 235.0 250 54.4
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 6.7e-60 235.0 259 53.7
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 8.7e-60 234.6 263 50.6
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 1.1e-59 234.2 262 50.4
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 1.1e-59 234.2 262 50.4
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 1.5e-59 233.8 232 53.4
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.3e-59 232.6 280 50.4
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 4.3e-59 232.3 250 51.2
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 5.7e-59 231.9 161 70.2
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 2.2e-58 229.9 262 49.6
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 2.2e-58 229.9 262 49.6
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.1e-57 227.6 261 48.7
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 9.0e-57 224.6 212 55.7
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.0e-55 221.1 258 49.6
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.5e-54 216.5 156 67.3
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.6e-53 212.6 210 54.3
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.6e-53 212.2 252 48.0
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 1.8e-52 210.3 253 48.2
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 2.3e-52 209.9 203 56.2
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.3e-52 209.9 210 53.8
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 2.0e-51 206.8 229 49.8
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 4.8e-50 202.2 229 51.5
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 6.9e-49 198.4 165 58.8
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.2e-48 197.6 226 49.1
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 2.9e-47 193.0 148 66.9
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 2.5e-46 189.9 154 63.0
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 7.9e-45 184.9 225 46.2
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 5.1e-44 182.2 132 67.4
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 1.5e-43 180.6 255 44.7
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 4.4e-43 179.1 334 35.9
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 5.7e-43 178.7 150 58.0
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 2.8e-42 176.4 273 41.8
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 2.4e-41 173.3 276 40.6
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 5.3e-41 172.2 261 43.3
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 3.8e-39 166.0 147 61.9
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 8.5e-39 164.9 144 62.5
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.4e-38 164.1 141 59.6
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 1.4e-38 164.1 147 61.2
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.9e-38 163.7 223 43.0
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.2e-38 162.9 228 43.9
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 4.2e-38 162.5 147 60.5
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 5.5e-38 162.2 143 62.2
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 7.2e-38 161.8 141 58.9
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 1.6e-37 160.6 141 60.3
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 6.1e-37 158.7 151 57.0
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 8.0e-37 158.3 141 58.9
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.0e-36 157.9 308 34.7
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.4e-36 157.5 143 60.8
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 1.4e-36 157.5 142 59.9
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 2.3e-36 156.8 140 57.9
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 2.6e-35 153.3 238 41.2
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 3.3e-35 152.9 182 48.4
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 1.1e-33 147.9 240 35.8
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 5.3e-33 145.6 149 55.0
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 1.6e-32 144.1 156 50.6
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 4.2e-30 136.0 148 50.0
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 7.2e-30 135.2 151 47.0
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 6.8e-28 128.6 222 39.6
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 3.6e-21 106.3 77 55.8
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 4.0e-20 102.8 139 47.5
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 2.6e-19 100.1 64 67.2
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 4.9e-10 69.3 87 41.4
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 1.4e-09 67.8 72 41.7
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 7.0e-09 65.5 82 39.0
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 1.1e-06 58.2 103 31.1


User provided reference genes

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