Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1988.0 1012 100.0
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1924.1 1012 97.1
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1828.1 1012 91.0
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1718.7 1013 85.6
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1362.4 1023 68.2
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1336.2 1021 66.1
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1328.2 1022 67.0
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1318.9 1023 66.1
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1308.1 1020 65.4
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1295.4 1012 66.1
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1287.7 1026 63.6
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1280.8 1014 63.9
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1276.2 1020 63.6
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1275.4 993 64.4
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1271.9 1012 62.9
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1266.5 1008 64.0
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1265.8 1008 64.2
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1260.4 1009 63.9
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1249.2 993 64.0
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1246.5 1026 63.5
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1246.1 1050 61.0
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1241.1 1023 62.6
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1240.3 1029 63.1
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1239.2 1026 63.2
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1238.0 1019 61.3
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1230.7 1019 61.6
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1230.3 1030 62.3
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1230.3 1022 60.8
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1220.3 1025 60.4
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1209.5 1011 61.0
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1203.3 1013 60.8
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1201.4 1014 62.2
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1199.1 1015 62.6
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1191.4 1014 61.5
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1190.6 1010 61.4
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1187.9 1021 60.4
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1182.2 1008 61.2
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1177.5 1018 58.8
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1175.6 1017 61.4
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1175.2 1016 59.2
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1174.1 1016 61.0
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1171.0 1040 59.5
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1169.5 903 66.7
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1151.0 1048 58.8
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1147.9 1072 57.3
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1146.0 1004 58.3
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1144.8 1015 57.2
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1144.8 991 59.3
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1138.3 1038 56.9
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1125.9 1009 57.1
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1120.9 1023 56.4
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1120.1 1014 57.8
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1107.4 1019 56.9
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1104.4 1015 56.8
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1104.0 1011 57.5
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1103.6 1019 56.5
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1102.4 1015 57.7
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1099.3 1014 55.5
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1096.3 1011 55.8
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1095.9 1021 56.1
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1090.5 1019 56.3
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1085.1 1015 56.5
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1080.9 1019 55.7
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1079.3 1019 55.5
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1077.8 1016 54.9
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1076.2 1014 55.7
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 6.9e-312 1073.9 1013 54.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 2.8e-311 1072.0 1017 54.6
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 5.8e-309 1064.3 1015 54.9
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 4.9e-308 1061.2 1024 54.5
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 1.9e-307 1059.3 1025 54.6
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 1.9e-307 1059.3 1039 54.4
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 5.4e-307 1057.7 990 56.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 7.1e-307 1057.4 1029 54.9
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 1.0e-305 1053.5 1007 54.7
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 1.1e-304 1050.0 898 60.9
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.5e-304 1049.7 1047 52.8
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 4.3e-304 1048.1 1011 55.0
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 9.0e-302 1040.4 845 64.0
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.4e-299 1033.1 1016 53.3
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.3e-297 1026.5 1038 54.1
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.9e-296 1022.7 946 55.6
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 7.6e-293 1010.7 1014 53.4
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 6.7e-289 997.7 1048 52.2
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.7e-284 983.0 975 53.4
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 4.9e-284 981.5 1017 52.2
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 1.6e-282 976.5 1023 50.6
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 6.3e-271 937.9 772 63.7
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 8.5e-268 927.5 1019 49.6
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.6e-266 923.3 1011 50.0
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 3.0e-265 919.1 736 64.0
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 1.5e-264 916.8 1018 50.1
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.4e-254 882.9 1023 48.3
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 5.4e-198 695.7 660 56.2
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.1e-197 693.7 660 56.1
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 7.1e-190 668.7 646 54.6
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.9e-182 644.0 631 55.5
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.9e-179 634.0 552 60.3
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.4e-174 615.9 590 52.9
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 6.7e-172 609.0 1087 35.6
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 6.1e-149 532.7 1105 33.9
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.8e-145 521.2 535 54.6
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 3.2e-134 483.8 951 35.1
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.6e-133 481.5 347 68.9
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 6.3e-106 389.8 1119 29.0
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.4e-100 372.1 1129 28.8
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 4.4e-99 367.1 389 49.4
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 4.9e-98 363.6 437 43.7
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 6.2e-93 346.7 335 55.8
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 5.2e-76 290.4 356 44.7
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 3.1e-60 238.0 258 48.1
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 6.5e-50 203.8 243 47.3
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.9e-49 202.2 555 31.4
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.7e-48 198.4 146 65.1
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 5.0e-42 177.6 230 47.4
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.4e-41 176.0 149 61.7
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 4.6e-32 144.4 149 45.6
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 5.3e-28 131.0 219 37.0
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 3.4e-27 128.3 438 28.1
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.4e-27 128.3 103 60.2
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 6.5e-26 124.0 171 42.1
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.1e-22 113.2 218 37.2
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.7e-22 110.9 81 59.3
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.6e-19 102.1 69 63.8
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.3e-18 99.8 69 62.3
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.3e-18 99.8 144 36.1
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 1.2e-16 93.2 77 50.6
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 8.0e-16 90.5 128 40.6
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.4e-15 89.7 239 31.4
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.4e-15 89.7 100 48.0
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.4e-12 79.7 55 63.6
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.4e-12 79.7 55 63.6
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.2e-11 76.6 47 68.1
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.0e-10 73.6 62 54.8
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.0e-10 73.6 150 35.3
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.0e-07 63.5 62 50.0
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.2e-06 60.1 33 81.8
Os02g0600000 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.5e-06 57.4 48 54.2


User provided reference genes

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