Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 0.0e+00 1354.3 724 100.0
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 0.0e+00 1122.8 648 93.2
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 1.2e-305 1052.7 677 87.1
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 4.3e-258 894.8 524 91.2
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 3.3e-250 868.6 657 69.1
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 5.3e-248 861.3 654 70.2
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 7.0e-248 860.9 635 73.7
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.5e-242 843.2 642 71.3
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.1e-240 837.0 656 69.7
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 9.1e-240 833.9 681 65.9
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 2.9e-238 828.9 631 70.5
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 9.7e-234 813.9 649 64.1
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.7e-233 813.1 642 69.3
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.8e-232 809.7 651 68.5
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 7.0e-232 807.7 651 68.5
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.1e-232 807.4 651 68.2
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 8.5e-230 800.8 640 64.7
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 9.4e-229 797.3 627 70.0
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.7e-228 795.8 658 65.5
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.4e-227 793.5 637 67.5
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 3.0e-227 792.3 616 71.9
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 4.8e-225 785.0 625 69.9
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 2.4e-224 782.7 642 67.4
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.4e-224 782.7 690 59.7
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 9.1e-224 780.8 619 64.3
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 7.7e-223 777.7 619 64.1
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.0e-222 777.3 626 64.4
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.3e-222 776.9 654 61.5
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 8.6e-222 774.2 650 65.1
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 9.5e-221 770.8 632 63.4
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 1.2e-220 770.4 622 67.0
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 6.1e-220 768.1 641 62.6
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 5.2e-219 765.0 655 66.0
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 8.9e-219 764.2 622 63.7
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 8.9e-219 764.2 622 63.7
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 2.6e-218 762.7 626 66.8
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 3.4e-218 762.3 645 64.2
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 5.7e-218 761.5 623 62.8
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.3e-217 760.4 637 61.4
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.3e-217 760.4 624 67.8
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 6.3e-217 758.1 629 67.4
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 8.3e-217 757.7 538 70.1
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.1e-216 757.3 626 68.2
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 3.2e-216 755.7 615 63.4
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 5.4e-216 755.0 635 65.5
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 7.0e-216 754.6 622 63.8
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 3.5e-215 752.3 621 65.5
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 4.5e-215 751.9 611 69.4
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.3e-214 749.6 630 67.5
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 3.9e-214 748.8 609 66.3
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 6.6e-214 748.0 623 65.3
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.1e-213 747.3 660 62.0
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 3.3e-213 745.7 618 61.7
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 4.3e-213 745.3 624 60.9
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.1e-212 743.0 542 68.3
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 3.6e-212 742.3 656 59.3
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.0e-211 740.7 619 62.0
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.8e-211 740.0 617 60.6
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 4.0e-211 738.8 561 66.0
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 6.8e-211 738.0 624 60.7
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 7.5e-210 734.6 623 64.8
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 1.7e-209 733.4 574 64.1
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.2e-209 733.0 626 60.2
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.3e-209 731.1 629 66.8
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 4.6e-207 725.3 619 59.8
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 7.8e-207 724.5 632 59.5
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 7.8e-207 724.5 564 64.0
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 7.3e-205 718.0 578 67.1
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 1.6e-204 716.8 623 64.2
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 3.1e-203 712.6 629 63.4
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 3.7e-201 705.7 620 64.8
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 6.0e-199 698.4 630 58.3
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 1.0e-198 697.6 673 56.9
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 1.3e-198 697.2 630 57.9
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.0e-198 696.0 641 60.5
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 5.1e-198 695.3 616 63.3
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.9e-197 693.3 647 60.0
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 2.1e-196 689.9 647 59.7
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 5.8e-194 681.8 531 68.5
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 7.1e-192 674.9 646 58.4
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 6.0e-191 671.8 646 58.0
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 8.6e-190 667.9 604 60.9
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 8.9e-187 657.9 647 58.4
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 2.1e-180 636.7 678 51.5
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 7.6e-178 628.2 505 68.1
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.3e-174 616.7 476 67.6
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.6e-167 594.0 622 52.4
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 8.7e-166 588.2 624 51.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 6.9e-163 578.6 456 66.0
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 1.6e-159 567.4 626 53.2
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 7.4e-157 558.5 466 64.2
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.8e-156 555.8 546 57.1
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 6.9e-147 525.4 392 68.9
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 8.8e-142 508.4 636 51.4
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 2.4e-139 500.4 611 49.4
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-138 498.0 437 61.3
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 5.0e-137 492.7 637 47.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 9.4e-136 488.4 627 47.7
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.1e-133 481.5 627 45.9
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.0e-133 480.7 364 73.6
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 4.7e-127 459.5 581 47.0
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-125 454.1 332 67.2
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 1.7e-124 451.1 365 61.1
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 6.3e-108 396.0 518 49.8
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.6e-103 381.3 316 58.9
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-100 370.9 539 41.9
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 7.8e-90 335.9 313 61.3
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 3.0e-89 334.0 255 69.0
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.1e-88 332.0 352 56.0
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.1e-79 301.2 264 68.6
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.2e-78 296.6 215 67.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 9.6e-72 275.8 276 59.4
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-68 265.4 194 64.9
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-68 265.4 206 63.1
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.6e-66 256.9 207 73.9
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.6e-64 250.0 200 61.5
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 8.1e-55 219.5 184 64.7
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 5.6e-48 196.8 173 72.3
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.3e-47 195.7 173 71.7
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 9.0e-46 189.5 169 56.2
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.7e-44 185.3 171 67.8
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.5e-43 181.4 122 68.9
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 7.6e-37 159.8 173 52.0
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 3.8e-36 157.5 169 58.0
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.3e-33 148.3 179 51.4
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.7e-32 143.7 105 64.8
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.9e-29 133.7 92 68.5
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.4e-24 117.5 97 57.7
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-23 115.9 78 74.4
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 8.2e-23 113.2 142 45.1
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 5.9e-21 107.1 307 27.4
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-20 105.1 80 62.5
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.1e-19 102.8 109 50.5
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 3.6e-18 97.8 70 61.4
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 3.9e-17 94.4 60 70.0
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 2.2e-15 88.6 79 58.2
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 2.0e-13 82.0 91 51.6
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 2.2e-12 78.6 86 47.7
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.5e-08 65.9 45 60.0
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 5.7e-08 63.9 45 57.8
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 5.7e-08 63.9 45 57.8


User provided reference genes

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