Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 0.0e+00 1259.2 648 100.0
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 0.0e+00 1163.7 655 91.8
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 0.0e+00 1140.2 649 87.4
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 0.0e+00 1097.4 649 83.2
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 2.2e-253 879.0 652 68.3
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 2.7e-251 872.1 647 68.8
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 3.0e-250 868.6 647 66.6
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 1.1e-249 866.7 655 67.2
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 7.4e-249 864.0 655 66.1
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 6.2e-248 860.9 653 65.8
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 6.9e-247 857.4 656 65.9
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 2.9e-245 852.0 680 65.0
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 2.9e-245 852.0 653 64.5
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 4.2e-244 848.2 647 64.9
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.2e-243 846.7 650 64.3
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 5.1e-242 841.3 648 64.4
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.5e-241 839.7 654 63.5
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.3e-241 838.6 647 64.0
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.8e-240 835.5 649 64.9
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.1e-239 833.6 649 64.6
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.1e-239 832.0 654 63.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 9.0e-239 830.5 650 63.4
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.4e-238 828.6 649 63.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.0e-237 827.0 652 64.9
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.8e-234 816.2 626 65.0
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 5.1e-234 814.7 625 65.4
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.5e-233 813.1 650 63.1
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 1.9e-233 812.8 649 61.5
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 3.3e-233 812.0 625 65.0
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 4.3e-233 811.6 625 65.6
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 5.7e-233 811.2 647 64.0
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 1.3e-232 810.1 625 65.3
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 8.2e-232 807.4 647 61.2
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.1e-231 807.0 626 64.4
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.1e-231 807.0 626 64.4
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 2.0e-230 802.7 626 64.2
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 3.4e-230 802.0 648 61.4
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 8.5e-229 797.3 650 60.9
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 5.5e-228 794.7 639 63.2
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.2e-227 793.5 652 61.8
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 1.2e-227 793.5 646 62.4
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 6.1e-227 791.2 652 62.3
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.8e-226 789.6 651 62.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 5.1e-226 788.1 644 61.2
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 5.1e-226 788.1 651 61.9
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 8.7e-226 787.3 625 64.0
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 2.5e-225 785.8 644 61.0
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 5.7e-225 784.6 653 60.8
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 1.3e-224 783.5 644 60.7
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.6e-224 783.1 628 63.7
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.6e-224 783.1 651 61.9
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 2.2e-224 782.7 644 60.9
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 3.7e-224 781.9 644 61.3
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 8.2e-224 780.8 648 60.6
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.4e-223 780.0 654 61.8
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 9.1e-223 777.3 652 60.4
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 5.9e-222 774.6 654 60.6
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 7.7e-222 774.2 616 62.7
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.0e-221 773.9 653 61.6
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 3.8e-221 771.9 651 57.9
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 2.5e-220 769.2 652 59.5
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 5.5e-220 768.1 651 60.7
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 5.5e-220 768.1 645 59.5
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 7.2e-220 767.7 651 59.6
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 7.9e-219 764.2 642 59.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 5.1e-218 761.5 645 61.4
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 7.4e-217 757.7 645 58.6
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 7.4e-217 757.7 654 60.2
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 1.7e-216 756.5 646 59.0
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.7e-216 756.5 613 62.5
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 3.7e-216 755.4 661 60.2
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 8.2e-216 754.2 646 58.7
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 2.4e-215 752.7 538 69.1
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 3.4e-214 748.8 621 62.6
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.3e-213 746.9 647 58.3
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.3e-213 746.9 650 60.0
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 1.4e-212 743.4 657 57.5
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 6.7e-210 734.6 658 57.4
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.5e-209 733.4 663 57.2
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 7.4e-209 731.1 653 58.8
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 2.9e-205 719.2 652 55.5
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 4.2e-204 715.3 646 56.3
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.3e-202 709.5 650 52.5
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 6.1e-195 684.9 650 55.1
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 1.1e-191 674.1 641 53.8
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.8e-186 656.8 572 57.5
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.4e-177 625.5 585 52.1
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 1.2e-174 617.5 669 50.2
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 4.3e-164 582.4 486 61.3
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.8e-163 579.7 618 55.0
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 6.2e-163 578.6 504 57.3
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 7.1e-159 565.1 573 54.1
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 9.5e-156 554.7 664 47.0
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 7.1e-143 511.9 590 49.3
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 5.3e-138 495.7 629 42.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.6e-134 484.2 476 55.3
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.7e-128 464.2 640 42.2
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 1.1e-127 461.5 627 41.1
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 3.7e-123 446.4 255 83.5
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.8e-120 436.4 541 46.4
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 5.3e-114 416.0 397 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 5.7e-92 342.8 633 35.9
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 1.3e-91 341.7 394 46.7
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.1e-90 338.6 296 60.5
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.4e-90 338.2 480 42.1
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 7.0e-90 335.9 178 84.8
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.8e-85 321.2 352 48.3
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 3.7e-83 313.5 425 42.1
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.6e-76 290.8 197 70.6
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 9.5e-55 219.2 169 65.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 6.2e-54 216.5 271 41.0
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.4e-52 210.7 104 90.4
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 6.4e-51 206.5 106 84.0
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 2.1e-41 174.9 217 43.3
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 2.9e-35 154.5 200 41.5
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 5.4e-34 150.2 495 30.1
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 2.3e-32 144.8 137 55.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.0e-32 144.4 178 44.4
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 7.3e-31 139.8 152 53.3
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 2.2e-27 128.3 86 74.4
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 2.3e-24 118.2 58 82.8
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.9e-24 117.5 83 67.5
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 6.2e-22 110.2 102 53.9
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 1.4e-21 109.0 74 70.3
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 3.2e-18 97.8 72 61.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 7.4e-15 86.7 76 57.9
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 1.6e-14 85.5 74 59.5
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 1.6e-14 85.5 74 58.1
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 8.1e-14 83.2 74 58.1
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 1.1e-13 82.8 74 56.8
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 6.9e-13 80.1 74 56.8
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 6.4e-11 73.6 93 48.4
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.4e-10 72.4 100 42.0
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 8.7e-08 63.2 95 40.0
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 2.5e-07 61.6 95 41.1
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 3.7e-06 57.8 105 28.6


User provided reference genes

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