Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 1.8e-63 245.7 123 100.0
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 4.3e-57 224.6 137 84.7
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 6.4e-45 184.1 135 74.8
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 3.1e-39 165.2 132 68.2
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 3.8e-29 131.7 140 55.7
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 1.1e-28 130.2 136 56.6
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.1e-28 130.2 136 56.6
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.4e-28 129.8 137 56.2
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 2.5e-28 129.0 139 54.7
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 3.2e-28 128.6 133 55.6
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 4.2e-28 128.3 139 54.0
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 4.2e-28 128.3 140 55.7
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 4.2e-28 128.3 134 53.7
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 5.5e-28 127.9 133 55.6
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 9.3e-28 127.1 134 55.2
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 9.3e-28 127.1 138 55.1
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 1.6e-27 126.3 147 51.0
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 1.6e-27 126.3 133 56.4
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 2.1e-27 125.9 137 55.5
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 4.6e-27 124.8 136 54.4
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 6.0e-27 124.4 136 54.4
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 7.9e-27 124.0 128 56.2
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 7.9e-27 124.0 134 53.0
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.0e-26 123.6 136 54.4
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 1.3e-26 123.2 112 58.9
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 2.3e-26 122.5 124 56.5
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 3.9e-26 121.7 144 49.3
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 8.7e-26 120.6 132 53.0
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 8.7e-26 120.6 144 48.6
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 8.7e-26 120.6 136 52.2
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 1.1e-25 120.2 139 51.1
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 1.9e-25 119.4 144 47.9
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 3.3e-25 118.6 127 55.1
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 4.3e-25 118.2 130 54.6
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 5.7e-25 117.9 142 50.0
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 5.7e-25 117.9 134 53.7
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 7.4e-25 117.5 123 54.5
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 1.3e-24 116.7 137 51.1
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 2.2e-24 115.9 123 52.8
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 2.8e-24 115.5 135 51.1
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 2.8e-24 115.5 136 50.7
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 3.7e-24 115.2 145 49.0
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 1.4e-23 113.2 93 59.1
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 1.4e-23 113.2 141 49.6
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 1.8e-23 112.8 136 50.0
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 1.8e-23 112.8 131 51.1
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 2.4e-23 112.5 138 51.4
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 9.0e-23 110.5 138 48.6
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 9.0e-23 110.5 130 53.1
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 1.5e-22 109.8 148 45.9
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 2.6e-22 109.0 124 53.2
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 2.6e-22 109.0 135 46.7
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 1.0e-21 107.1 124 49.2
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 1.0e-21 107.1 108 58.3
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 1.3e-21 106.7 140 48.6
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 1.3e-21 106.7 144 45.8
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 2.9e-21 105.5 120 46.7
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 2.9e-21 105.5 140 50.0
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 5.0e-21 104.8 98 59.2
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 1.1e-20 103.6 97 55.7
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 1.4e-20 103.2 128 47.7
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 1.9e-20 102.8 127 52.0
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 3.2e-20 102.1 123 50.4
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 4.2e-20 101.7 164 41.5
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 5.5e-20 101.3 127 48.8
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 5.5e-20 101.3 130 46.9
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 1.2e-19 100.1 137 49.6
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 1.6e-19 99.8 125 50.4
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 1.6e-19 99.8 129 48.8
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 2.7e-19 99.0 111 50.5
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 4.6e-19 98.2 131 46.6
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 1.0e-18 97.1 135 43.0
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 1.4e-18 96.7 136 41.9
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 1.4e-18 96.7 93 50.5
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 2.3e-18 95.9 109 52.3
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 2.3e-18 95.9 139 47.5
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 2.3e-18 95.9 139 46.0
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 3.9e-18 95.1 77 61.0
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 5.1e-18 94.7 129 45.7
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 1.1e-17 93.6 121 47.1
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.1e-17 93.6 108 50.9
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 1.5e-17 93.2 120 46.7
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 3.3e-17 92.0 139 46.8
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 9.7e-17 90.5 143 46.2
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 9.7e-17 90.5 143 46.2
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 1.7e-16 89.7 115 47.0
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 2.8e-16 89.0 120 46.7
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 2.8e-16 89.0 118 48.3
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 8.2e-16 87.4 144 45.1
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 5.3e-15 84.7 139 43.2
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 6.9e-15 84.3 121 44.6
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 6.9e-15 84.3 124 41.9
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 1.5e-14 83.2 123 46.3
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 1.5e-14 83.2 121 47.1
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 2.0e-14 82.8 121 47.1
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 2.0e-14 82.8 123 43.1
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 2.6e-14 82.4 121 47.1
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 3.4e-14 82.0 123 44.7
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 4.5e-14 81.6 123 45.5
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 4.5e-14 81.6 121 46.3
Sed0006942 Sechium edule HOM05D007505 ORTHO05D009476 3.8e-13 78.6 119 48.7
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 5.0e-13 78.2 91 49.5
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 8.5e-13 77.4 73 53.4
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 2.5e-12 75.9 122 41.8
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 7.2e-12 74.3 122 41.0
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 7.2e-12 74.3 122 41.8
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 2.1e-11 72.8 142 38.0
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 6.1e-11 71.2 121 41.3
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 2.6e-09 65.9 164 35.4
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 1.1e-07 60.5 71 47.9
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 5.9e-06 54.7 93 38.7


User provided reference genes

Program Settings