Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 2238.4 1165 100.0
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 2080.4 1166 93.1
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 2078.1 1114 96.9
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1934.8 1168 86.5
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1390.2 1182 62.9
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1382.1 1170 63.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1379.8 1184 62.1
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1375.9 1179 64.4
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1371.3 1178 63.3
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1367.1 1164 63.1
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1365.9 1184 62.0
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1363.6 1173 62.7
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1360.9 1188 61.8
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1359.4 1182 62.0
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1357.0 1181 62.6
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1353.2 1183 60.9
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1347.8 1163 61.5
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1335.9 1179 62.1
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1327.8 1202 60.4
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1324.3 1156 62.7
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1315.4 1175 61.1
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1314.7 1171 59.7
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1312.7 1186 60.3
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1307.7 1171 59.7
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1299.6 1167 61.1
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1298.5 1171 58.9
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1297.0 1173 61.1
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1295.0 1167 61.0
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1293.9 1171 60.0
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1292.7 1173 61.3
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1291.6 1172 60.5
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1287.7 1172 60.0
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1285.8 1276 55.7
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1282.7 1186 60.5
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1279.2 1037 63.3
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1278.1 1162 60.5
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1275.4 1169 60.7
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1272.7 1177 59.2
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1269.6 1170 60.3
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1264.6 1183 59.0
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1257.7 1221 57.3
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1256.1 1037 62.5
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1246.5 1350 54.4
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1241.1 1181 57.7
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1234.2 1181 57.8
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1228.8 1135 58.5
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1224.2 1184 57.2
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1219.5 1169 58.5
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1218.0 1194 57.6
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1216.8 1177 57.5
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1210.3 1244 55.7
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1207.6 1168 57.4
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1203.0 1165 56.7
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1196.8 1089 61.0
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1193.3 1205 56.0
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1192.9 1642 46.3
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1170.2 1177 55.5
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1170.2 1182 55.8
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1169.5 1144 57.5
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1169.5 1150 55.7
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1161.0 1164 53.9
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1157.1 1175 55.1
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1154.8 1172 55.5
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1149.4 1164 53.7
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1146.7 1172 53.8
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1146.3 1200 55.4
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1145.6 1174 54.7
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1137.9 1169 55.7
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1132.5 1196 52.8
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1128.2 1153 54.4
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1126.7 1165 55.6
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1126.7 1165 55.6
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1121.3 1123 55.6
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1119.0 1152 54.1
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1114.0 947 60.1
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1113.2 1172 55.1
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1102.8 1174 54.0
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 0.0e+00 1077.4 1031 55.4
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1077.0 1144 54.1
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 8.0e-312 1073.9 995 56.2
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 2.9e-304 1048.9 1057 55.4
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 1.5e-297 1026.5 1181 50.4
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 5.1e-293 1011.5 1040 51.3
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 3.1e-290 1002.3 1154 49.7
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 3.9e-277 958.7 1154 48.8
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 2.4e-274 949.5 1252 45.6
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 2.6e-252 876.3 1184 44.7
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 1.4e-250 870.5 980 51.2
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.2e-243 846.7 718 58.5
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 4.6e-233 812.4 722 57.3
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 6.0e-233 812.0 837 54.8
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 2.1e-225 786.9 1070 45.6
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 7.3e-223 778.5 634 63.4
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.1e-205 721.5 657 57.4
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.4e-205 720.3 658 57.1
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.2e-196 691.4 782 51.9
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 4.9e-195 686.0 971 41.5
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.1e-193 680.6 1047 39.9
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.6e-190 671.0 1037 38.1
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.6e-182 644.4 663 53.7
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.9e-176 623.2 1217 37.6
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 7.2e-170 602.4 1203 37.2
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 6.5e-163 579.3 511 59.5
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 1.8e-133 481.5 1222 30.7
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 2.1e-105 388.3 426 51.6
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.4e-96 359.0 413 55.0
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 2.8e-57 228.4 179 63.1
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.5e-55 222.6 275 41.8
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 3.5e-39 168.3 115 69.6
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 3.7e-25 121.7 271 30.6
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 1.3e-14 86.7 113 44.2
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 6.6e-14 84.3 81 54.3
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 3.6e-12 78.6 85 48.2
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.8e-11 76.3 71 53.5
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 6.8e-11 74.3 61 60.7
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.1e-08 67.0 84 40.5
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.4e-08 66.6 40 70.0
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 5.4e-08 64.7 182 41.8
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 1.6e-07 63.2 47 63.8
Lsat_1_v5_gn_0_32400 Lactuca sativa HOM05D002303 ORTHO05D004329 7.8e-07 60.8 97 41.2
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 3.9e-06 58.5 42 64.3
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 5.0e-06 58.2 37 67.6


User provided reference genes

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