Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G006960 Cucumis sativus L. HOM05D007058 ORTHO05D009036 2.0e-250 868.6 444 100.0
MELO3C002112.2 Cucumis melo HOM05D007058 ORTHO05D009036 4.0e-238 827.8 444 95.0
ClCG04G010870 Citrullus lanatus HOM05D007058 ORTHO05D009036 1.5e-216 756.1 444 87.4
Sed0017039 Sechium edule HOM05D007058 ORTHO05D009036 3.9e-193 678.3 437 81.2
QL10p026796 Quercus lobata HOM05D007058 ORTHO05D009036 8.0e-162 574.3 434 67.3
Dinv12229 Davidia involucrata HOM05D007058 ORTHO05D009036 2.4e-158 562.8 423 67.8
MD06G1220900 Malus domestica HOM05D007058 ORTHO05D009036 3.2e-155 552.4 443 65.7
Prupe.5G225300 Prunus persica HOM05D007058 ORTHO05D009036 8.0e-154 547.7 428 67.1
MD14G1230300 Malus domestica HOM05D007058 ORTHO05D009036 3.5e-149 532.3 443 64.3
Hma1.2p1_2594F.1_g325085 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 4.5e-149 531.9 445 63.4
Thecc.03G043100 Theobroma cacao HOM05D007058 ORTHO05D009036 3.8e-148 528.9 448 63.2
Hma1.2p1_1614F.1_g293670 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 2.5e-147 526.2 445 62.9
GSVIVG01008345001 Vitis vinifera HOM05D007058 ORTHO05D009036 2.5e-147 526.2 435 64.1
Manes.01G015400 Manihot esculenta HOM05D007058 ORTHO05D009036 5.5e-147 525.0 451 62.1
FAN18G2897 Fragaria x ananassa HOM05D007058 ORTHO05D009036 5.2e-145 518.5 430 63.5
Duzib205G0828 Durio zibethinus HOM05D007058 ORTHO05D009036 4.4e-144 515.4 409 65.0
FAN08G1503 Fragaria x ananassa HOM05D007058 ORTHO05D009036 4.4e-144 515.4 434 63.6
Actinidia02670 Actinidia chinensis HOM05D007058 ORTHO05D009036 7.5e-144 514.6 450 63.3
Gohir.A07G059500 Gossypium hirsutum HOM05D007058 ORTHO05D009036 7.5e-144 514.6 436 61.5
Cpa.g.sc3.458 Carica papaya HOM05D007058 ORTHO05D009036 2.2e-143 513.1 449 60.6
TAR629G3445 Trochodendron aralioides HOM05D007058 ORTHO05D009036 3.7e-143 512.3 407 65.1
TAR535G0005 Trochodendron aralioides HOM05D007058 ORTHO05D009036 6.3e-143 511.5 411 65.0
FAN04G2101 Fragaria x ananassa HOM05D007058 ORTHO05D009036 3.1e-142 509.2 429 63.6
Ciclev10020201m.g Citrus clementina HOM05D007058 ORTHO05D009036 4.1e-142 508.8 428 62.6
FAN13G1457 Fragaria x ananassa HOM05D007058 ORTHO05D009036 7.0e-142 508.1 434 62.4
RcHm_v2.0_Chr7g0179381 Rosa chinensis HOM05D007058 ORTHO05D009036 7.0e-142 508.1 410 64.4
Aqoxy3G04055 Aquilegia oxysepala HOM05D007058 ORTHO05D009036 1.2e-141 507.3 406 63.3
CANSAT80G0903 Cannabis sativa HOM05D007058 ORTHO05D009036 1.2e-141 507.3 447 61.5
COL.COLO4_38517 Corchorus olitorius HOM05D007058 ORTHO05D009036 6.6e-140 501.5 449 60.1
Sc12g0007400 Simmondsia chinensis HOM05D007058 ORTHO05D009036 6.6e-140 501.5 449 58.8
Haze_18744 Corylus avellana HOM05D007058 ORTHO05D009036 1.9e-139 500.0 401 64.8
TWI60G0394 Tripterygium wilfordii HOM05D007058 ORTHO05D009036 4.3e-139 498.8 445 62.0
Atru.chr9.916 Acer truncatum HOM05D007058 ORTHO05D009036 9.5e-139 497.7 437 62.5
Nn3g17960 Nelumbo nucifera HOM05D007058 ORTHO05D009036 6.1e-138 495.0 429 60.8
TAR371G0970 Trochodendron aralioides HOM05D007058 ORTHO05D009036 3.1e-137 492.7 435 60.2
Potri.012G053600 Populus trichocarpa HOM05D007058 ORTHO05D009036 6.8e-137 491.5 430 60.2
arahy.Tifrunner.gnm1.ann1.8NC01M Arachis hypogaea HOM05D007058 ORTHO05D009036 8.9e-137 491.1 410 62.0
Lj9A424T33 Lonicera japonica HOM05D007058 ORTHO05D009036 7.5e-136 488.0 423 62.4
arahy.Tifrunner.gnm1.ann1.LC4GJT Arachis hypogaea HOM05D007058 ORTHO05D009036 1.3e-135 487.3 380 65.0
PGR044G0638 Punica granatum HOM05D007058 ORTHO05D009036 1.7e-135 486.9 436 59.2
Sabra12G0037400 Salix brachista HOM05D007058 ORTHO05D009036 9.2e-134 481.1 384 64.6
Peaxi162Scf00683g00337 Petunia axillaris HOM05D007058 ORTHO05D009036 5.0e-132 475.3 402 60.9
Nitab4.5_0001456g0070 Nicotiana tabacum HOM05D007058 ORTHO05D009036 2.1e-130 469.9 406 61.1
PSO063G1254 Papaver somniferum HOM05D007058 ORTHO05D009036 6.2e-130 468.4 437 57.9
Cc04_g06820 Coffea canephora HOM05D007058 ORTHO05D009036 8.0e-130 468.0 399 60.7
Nitab4.5_0006894g0050 Nicotiana tabacum HOM05D007058 ORTHO05D009036 1.4e-129 467.2 406 60.6
PSO782G5502 Papaver somniferum HOM05D007058 ORTHO05D009036 1.4e-129 467.2 439 57.4
Hund02350 Selenicereus undatus HOM05D007058 ORTHO05D009036 4.0e-129 465.7 409 58.4
PGSC0003DMG400005667 Solanum tuberosum HOM05D007058 ORTHO05D009036 2.0e-128 463.4 441 56.9
AUR62033787 Chenopodium quinoa HOM05D007058 ORTHO05D009036 4.9e-127 458.8 443 54.4
Solyc03g118860.3 Solanum lycopersicum HOM05D007058 ORTHO05D009036 1.4e-126 457.2 436 56.9
Lj4g0007182 Lotus japonicus HOM05D007058 ORTHO05D009036 2.4e-126 456.4 448 57.8
Sopen03g037810 Solanum pennellii HOM05D007058 ORTHO05D009036 2.4e-126 456.4 436 57.1
MBI16_g25105_MAGBIO Magnolia biondii HOM05D007058 ORTHO05D009036 1.6e-125 453.8 401 59.9
EL10Ac5g11484 Beta vulgaris HOM05D007058 ORTHO05D009036 2.1e-125 453.4 428 56.1
Migut.I00419 Erythranthe guttata HOM05D007058 ORTHO05D009036 2.5e-123 446.4 381 61.9
THA.LOC104813907 Tarenaya hassleriana HOM05D007058 ORTHO05D009036 8.1e-122 441.4 397 57.2
VMungo0251G0619 Vigna mungo HOM05D007058 ORTHO05D009036 2.3e-121 439.9 447 55.5
Eucgr.K02237 Eucalyptus grandis HOM05D007058 ORTHO05D009036 5.8e-120 435.3 351 60.1
CAN.G1129.46 Capsicum annuum HOM05D007058 ORTHO05D009036 1.3e-119 434.1 405 57.8
Gorai.001G067900 Gossypium raimondii HOM05D007058 ORTHO05D009036 5.1e-116 422.2 359 61.6
ATR0681G321 Amborella trichopoda HOM05D007058 ORTHO05D009036 1.5e-115 420.6 408 55.4
HPP92_023400 Vanilla planifolia HOM05D007058 ORTHO05D009036 3.1e-113 412.9 382 54.2
CARHR066810 Cardamine hirsuta HOM05D007058 ORTHO05D009036 5.2e-113 412.1 439 52.2
Thhalv10018574m.g Eutrema salsugineum HOM05D007058 ORTHO05D009036 6.8e-113 411.8 443 51.2
Sp5g28930 Schrenkiella parvula HOM05D007058 ORTHO05D009036 6.8e-113 411.8 408 53.2
A07p39600 Brassica napus HOM05D007058 ORTHO05D009036 3.4e-112 409.5 399 53.6
AL2G33550 Arabidopsis lyrata HOM05D007058 ORTHO05D009036 1.3e-111 407.5 443 51.0
BraA07t31509Z Brassica rapa HOM05D007058 ORTHO05D009036 1.3e-111 407.5 399 53.1
C06p47890 Brassica napus HOM05D007058 ORTHO05D009036 1.9e-110 403.7 438 50.7
BolC6t39824H Brassica oleracea HOM05D007058 ORTHO05D009036 1.9e-110 403.7 438 50.7
AT1G73740 Arabidopsis thaliana HOM05D007058 ORTHO05D009036 2.4e-110 403.3 429 51.3
BcaB03g15080 Brassica carinata HOM05D007058 ORTHO05D009036 5.4e-110 402.1 430 50.7
Oeu017513.1 Olea europaea HOM05D007058 ORTHO05D009036 9.3e-110 401.4 343 63.6
Carub.0002s2049 Capsella rubella HOM05D007058 ORTHO05D009036 3.5e-109 399.4 441 49.4
Aa31LG4G4070 Aethionema arabicum HOM05D007058 ORTHO05D009036 5.1e-108 395.6 439 49.7
Phvul.002G325300 Phaseolus vulgaris HOM05D007058 ORTHO05D009036 2.8e-106 389.8 401 54.9
AUR62029919 Chenopodium quinoa HOM05D007058 ORTHO05D009036 3.3e-99 366.3 359 54.6
HPP92_027335 Vanilla planifolia HOM05D007058 ORTHO05D009036 2.6e-96 356.7 375 50.4
HPP92_017197 Vanilla planifolia HOM05D007058 ORTHO05D009036 1.3e-95 354.4 375 50.1
Glyma.05G242000 Glycine max HOM05D007058 ORTHO05D009036 6.4e-95 352.1 302 62.3
FvH4_5g16720 Fragaria vesca HOM05D007058 ORTHO05D009036 2.4e-94 350.1 308 60.1
Mapoly0014s0012 Marchantia polymorpha HOM05D007058 ORTHO05D009036 7.6e-88 328.6 412 44.7
Rhsim08G0129700 Rhododendron simsii HOM05D007058 ORTHO05D009036 1.9e-86 323.9 315 55.9
Mapoly0014s0018 Marchantia polymorpha HOM05D007058 ORTHO05D009036 5.0e-79 299.3 383 44.4
SMO271G0182 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 2.5e-78 297.0 377 43.8
Pp3c1_26880 Physcomitrium patens HOM05D007058 ORTHO05D009036 7.4e-75 285.4 369 40.9
SMO308G0041 Selaginella moellendorffii HOM05D007058 ORTHO05D009036 2.0e-72 277.3 413 40.2
Gohir.D07G064300 Gossypium hirsutum HOM05D007058 ORTHO05D009036 1.3e-71 274.6 260 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2408 Anthoceros agrestis HOM05D007058 ORTHO05D009036 1.4e-70 271.2 303 49.8
Os01g0516700 Oryza sativa ssp. japonica HOM05D007058 ORTHO05D009036 6.1e-61 239.2 303 46.5
MCO02G081 Micromonas commoda HOM05D007058 ORTHO05D009036 1.3e-58 231.5 403 38.0
PRCOL_00000956 Prasinoderma coloniale HOM05D007058 ORTHO05D009036 1.5e-54 218.0 374 39.3
Glyma.08G049500 Glycine max HOM05D007058 ORTHO05D009036 3.3e-51 206.8 249 50.2
CBR_g74658 Chara braunii HOM05D007058 ORTHO05D009036 5.5e-46 189.5 611 26.4
Glyma.08G049450 Glycine max HOM05D007058 ORTHO05D009036 2.2e-42 177.6 116 75.0
Zm00001eb132130 Zea mays HOM05D007058 ORTHO05D009036 2.8e-42 177.2 249 41.4
arahy.Tifrunner.gnm1.ann1.4SU3WD Arachis hypogaea HOM05D007058 ORTHO05D009036 1.3e-39 168.3 132 60.6
CAN.G1074.8 Capsicum annuum HOM05D007058 ORTHO05D009036 5.7e-35 152.9 129 60.5
SalBow5G0499 Salvia bowleyana HOM05D007058 ORTHO05D010040 1.3e-26 125.2 133 53.4
CAN.G169.6 Capsicum annuum HOM05D007058 ORTHO05D009036 1.6e-21 108.2 98 59.2
SEGI_28231 Sequoiadendron giganteum HOM05D007058 ORTHO05D009036 1.0e-20 105.5 78 65.4
Cre12.g527950 Chlamydomonas reinhardtii HOM05D007058 ORTHO05D009036 8.9e-20 102.4 368 26.1
AUR62029918 Chenopodium quinoa HOM05D007058 ORTHO05D009036 3.7e-18 97.1 85 52.9
Gorai.001G067800 Gossypium raimondii HOM05D007058 ORTHO05D009036 4.9e-18 96.7 80 61.2
Ah.11g045170 Amaranthus hybridus HOM05D007058 ORTHO05D009036 1.6e-16 91.7 85 54.1
CAN.G507.4 Capsicum annuum HOM05D006747 ORTHO05D008384 5.0e-15 86.7 90 52.2
BcaC08g46795 Brassica carinata HOM05D007058 ORTHO05D009036 2.3e-12 77.8 243 31.3
Gohir.D07G064250 Gossypium hirsutum HOM05D007058 ORTHO05D009036 3.4e-11 73.9 61 63.9
arahy.Tifrunner.gnm1.ann1.MMR300 Arachis hypogaea HOM05D007058 ORTHO05D009036 4.4e-11 73.6 75 52.0
Rhsim08G0129900 Rhododendron simsii HOM05D007058 ORTHO05D009036 2.9e-10 70.9 54 63.0
Rhsim08G0129800 Rhododendron simsii HOM05D007058 ORTHO05D021411 9.2e-09 65.9 37 86.5


User provided reference genes

Program Settings