Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 5.4e-36 153.7 71 100.0
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 8.0e-24 113.2 59 86.4
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 3.7e-21 104.4 47 100.0
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 4.3e-17 90.9 56 73.2
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 5.6e-17 90.5 50 82.0
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 5.6e-17 90.5 50 82.0
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 5.6e-17 90.5 50 82.0
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 5.6e-17 90.5 50 82.0
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 7.3e-17 90.1 50 84.0
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 9.5e-17 89.7 50 84.0
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 2.8e-16 88.2 50 84.0
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 4.7e-16 87.4 52 80.8
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 4.7e-16 87.4 55 76.4
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.1e-15 86.3 50 76.0
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.4e-15 85.9 50 76.0
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 1.4e-15 85.9 54 72.2
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 1.8e-15 85.5 50 80.0
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 2.3e-15 85.1 52 78.8
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 2.3e-15 85.1 52 78.8
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 3.1e-15 84.7 48 77.1
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 3.1e-15 84.7 56 71.4
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 5.2e-15 84.0 50 78.0
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 5.2e-15 84.0 50 76.0
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 5.2e-15 84.0 50 76.0
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 6.8e-15 83.6 56 69.6
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 8.9e-15 83.2 50 76.0
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 8.9e-15 83.2 50 76.0
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 8.9e-15 83.2 50 72.0
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 8.9e-15 83.2 50 74.0
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.5e-14 82.4 50 76.0
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 2.0e-14 82.0 50 74.0
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.6e-14 81.6 50 74.0
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.6e-14 81.6 50 74.0
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 3.4e-14 81.3 50 72.0
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 4.4e-14 80.9 51 74.5
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 5.8e-14 80.5 58 69.0
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 5.8e-14 80.5 52 71.2
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 7.5e-14 80.1 48 75.0
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 7.5e-14 80.1 52 71.2
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 9.9e-14 79.7 51 72.5
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 9.9e-14 79.7 50 72.0
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 9.9e-14 79.7 50 72.0
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 9.9e-14 79.7 49 75.5
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 1.3e-13 79.3 63 63.5
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 1.3e-13 79.3 46 76.1
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 1.3e-13 79.3 46 76.1
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.3e-13 79.3 50 72.0
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.3e-13 79.3 52 69.2
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 1.7e-13 79.0 47 76.6
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.7e-13 79.0 52 69.2
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.7e-13 79.0 47 76.6
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.2e-13 78.6 50 68.0
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 2.2e-13 78.6 50 72.0
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.2e-13 78.6 50 72.0
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 2.2e-13 78.6 50 70.0
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.2e-13 78.6 47 76.6
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 2.9e-13 78.2 50 70.0
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 2.9e-13 78.2 52 67.3
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 2.9e-13 78.2 46 76.1
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 2.9e-13 78.2 48 70.8
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 2.9e-13 78.2 51 68.6
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 3.7e-13 77.8 50 68.0
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 3.7e-13 77.8 52 67.3
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 3.7e-13 77.8 46 71.7
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 3.7e-13 77.8 50 72.0
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 3.7e-13 77.8 50 72.0
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 4.9e-13 77.4 46 76.1
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 4.9e-13 77.4 46 76.1
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 4.9e-13 77.4 46 76.1
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 4.9e-13 77.4 50 74.0
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 6.4e-13 77.0 52 65.4
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 6.4e-13 77.0 52 65.4
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 6.4e-13 77.0 52 67.3
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 6.4e-13 77.0 50 70.0
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 8.3e-13 76.6 50 68.0
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.1e-12 76.3 50 70.0
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 1.4e-12 75.9 48 72.9
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 1.4e-12 75.9 50 66.0
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.4e-12 75.9 52 65.4
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 2.4e-12 75.1 50 64.0
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 3.2e-12 74.7 50 72.0
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 4.1e-12 74.3 46 69.6
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 4.1e-12 74.3 46 69.6
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 4.1e-12 74.3 46 69.6
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 5.4e-12 73.9 50 68.0
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 7.1e-12 73.6 47 70.2
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 7.1e-12 73.6 47 66.0
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 1.2e-11 72.8 50 70.0
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 6.0e-11 70.5 53 67.9
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 2.3e-10 68.6 48 66.7
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 5.1e-10 67.4 47 61.7
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 8.6e-10 66.6 46 65.2
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.9e-09 65.5 46 63.0
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.9e-09 65.5 46 63.0
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 4.3e-09 64.3 47 61.7
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.8e-08 61.6 49 63.3
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 2.8e-08 61.6 49 63.3
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 8.1e-08 60.1 55 49.1
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 8.9e-07 56.6 49 49.0
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.5e-06 55.8 43 53.5
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 5.8e-06 53.9 33 69.7


User provided reference genes

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