Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.0e-54 216.5 109 100.0
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 4.4e-29 131.3 74 90.5
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.7e-28 129.4 87 78.2
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.4e-22 109.8 75 78.7
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 9.8e-13 77.0 86 57.0
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 8.3e-12 73.9 85 51.8
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.4e-11 73.2 88 53.4
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.4e-11 73.2 94 51.1
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 2.4e-11 72.4 88 52.3
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.4e-11 72.4 84 52.4
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 3.2e-11 72.0 73 56.2
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 5.4e-11 71.2 85 49.4
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 7.0e-11 70.9 76 53.9
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 9.2e-11 70.5 93 49.5
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 2.0e-10 69.3 85 47.1
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.7e-10 68.9 89 48.3
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 3.5e-10 68.6 85 48.2
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 3.5e-10 68.6 85 47.1
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 7.8e-10 67.4 84 51.2
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 1.0e-09 67.0 104 42.3
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 3.9e-09 65.1 80 50.0
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 3.9e-09 65.1 86 46.5
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 5.0e-09 64.7 83 53.0
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 8.6e-09 63.9 93 47.3
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 1.1e-08 63.5 87 46.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 1.1e-08 63.5 102 40.2
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 2.5e-08 62.4 84 46.4
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 3.3e-08 62.0 85 44.7
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 4.3e-08 61.6 91 45.1
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.3e-08 61.6 99 44.4
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 5.6e-08 61.2 94 44.7
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 7.3e-08 60.8 86 48.8
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 9.5e-08 60.5 81 50.6
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.6e-07 59.7 78 46.2
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.6e-07 59.7 83 45.8
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.6e-07 58.5 81 49.4
Cc00_g01560 Coffea canephora HOM05D005752 ORTHO05D006959 4.7e-07 58.2 95 44.2
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 6.2e-07 57.8 78 46.2
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.2e-07 57.8 82 47.6
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 8.0e-07 57.4 86 50.0
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 8.0e-07 57.4 110 40.0
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 1.1e-06 57.0 103 47.6
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 1.4e-06 56.6 86 46.5
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 1.4e-06 56.6 94 45.7
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 2.3e-06 55.8 87 48.3
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 3.1e-06 55.5 83 44.6
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 3.1e-06 55.5 79 44.3
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.0e-06 55.1 85 48.2
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 5.2e-06 54.7 82 43.9
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 6.8e-06 54.3 99 41.4
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 6.8e-06 54.3 90 45.6
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 6.8e-06 54.3 86 43.0
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 6.8e-06 54.3 91 37.4
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 6.8e-06 54.3 100 43.0
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 8.9e-06 53.9 100 41.0


User provided reference genes

Program Settings